Hb_000056_040

Information

Type -
Description -
Location Contig56: 33939-43326
Sequence    

Annotation

kegg
ID rcu:RCOM_0697650
description calmodulin binding protein, putative
nr
ID XP_012091920.1
description PREDICTED: protein IQ-DOMAIN 31 [Jatropha curcas]
swissprot
ID Q8L4D8
description Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
trembl
ID A0A067JMK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21686 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48673: 34097-36096 , PASA_asmbl_48674: 36148-42984 , PASA_asmbl_48675: 40654-41173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_040 0.0 - - PREDICTED: protein IQ-DOMAIN 31 [Jatropha curcas]
2 Hb_000300_690 0.1013643983 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
3 Hb_004369_020 0.1122702309 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
4 Hb_004884_070 0.1131918774 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
5 Hb_001450_050 0.1172204258 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000599_180 0.1233900808 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_001638_290 0.1240934296 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
8 Hb_001001_080 0.124812564 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
9 Hb_008695_020 0.1295302041 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
10 Hb_002542_020 0.130291458 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
11 Hb_000679_130 0.1321932976 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_001975_090 0.1330749255 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
13 Hb_009646_030 0.1341674713 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003728_080 0.1353506575 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
15 Hb_002749_090 0.1360937888 - - -
16 Hb_004007_220 0.1364787604 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
17 Hb_008096_010 0.1365481862 - - hypothetical protein MTR_1g045660 [Medicago truncatula]
18 Hb_034482_030 0.13793463 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
19 Hb_002997_080 0.1389767941 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
20 Hb_002078_160 0.1399098296 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]

Gene co-expression network

sample Hb_000056_040 Hb_000056_040 Hb_000300_690 Hb_000300_690 Hb_000056_040--Hb_000300_690 Hb_004369_020 Hb_004369_020 Hb_000056_040--Hb_004369_020 Hb_004884_070 Hb_004884_070 Hb_000056_040--Hb_004884_070 Hb_001450_050 Hb_001450_050 Hb_000056_040--Hb_001450_050 Hb_000599_180 Hb_000599_180 Hb_000056_040--Hb_000599_180 Hb_001638_290 Hb_001638_290 Hb_000056_040--Hb_001638_290 Hb_000690_160 Hb_000690_160 Hb_000300_690--Hb_000690_160 Hb_000300_690--Hb_000599_180 Hb_000046_040 Hb_000046_040 Hb_000300_690--Hb_000046_040 Hb_000300_690--Hb_004884_070 Hb_024836_010 Hb_024836_010 Hb_000300_690--Hb_024836_010 Hb_003728_080 Hb_003728_080 Hb_004369_020--Hb_003728_080 Hb_004369_020--Hb_001450_050 Hb_000010_090 Hb_000010_090 Hb_004369_020--Hb_000010_090 Hb_000173_290 Hb_000173_290 Hb_004369_020--Hb_000173_290 Hb_004182_040 Hb_004182_040 Hb_004369_020--Hb_004182_040 Hb_000010_330 Hb_000010_330 Hb_004369_020--Hb_000010_330 Hb_004884_070--Hb_000690_160 Hb_002374_240 Hb_002374_240 Hb_004884_070--Hb_002374_240 Hb_001322_140 Hb_001322_140 Hb_004884_070--Hb_001322_140 Hb_001001_080 Hb_001001_080 Hb_004884_070--Hb_001001_080 Hb_000753_240 Hb_000753_240 Hb_004884_070--Hb_000753_240 Hb_000866_010 Hb_000866_010 Hb_004884_070--Hb_000866_010 Hb_001450_050--Hb_003728_080 Hb_010139_040 Hb_010139_040 Hb_001450_050--Hb_010139_040 Hb_002835_040 Hb_002835_040 Hb_001450_050--Hb_002835_040 Hb_000330_100 Hb_000330_100 Hb_001450_050--Hb_000330_100 Hb_148209_100 Hb_148209_100 Hb_001450_050--Hb_148209_100 Hb_000599_180--Hb_001001_080 Hb_000050_190 Hb_000050_190 Hb_000599_180--Hb_000050_190 Hb_021409_180 Hb_021409_180 Hb_000599_180--Hb_021409_180 Hb_000340_420 Hb_000340_420 Hb_000599_180--Hb_000340_420 Hb_000808_050 Hb_000808_050 Hb_000599_180--Hb_000808_050 Hb_002542_020 Hb_002542_020 Hb_000599_180--Hb_002542_020 Hb_000922_330 Hb_000922_330 Hb_001638_290--Hb_000922_330 Hb_003641_050 Hb_003641_050 Hb_001638_290--Hb_003641_050 Hb_000679_130 Hb_000679_130 Hb_001638_290--Hb_000679_130 Hb_008695_020 Hb_008695_020 Hb_001638_290--Hb_008695_020 Hb_034482_030 Hb_034482_030 Hb_001638_290--Hb_034482_030 Hb_014720_160 Hb_014720_160 Hb_001638_290--Hb_014720_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7134 4.37758 14.8601 14.1877 19.9594 15.9269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24445 8.67783 20.9569 5.17465 15.7756

CAGE analysis