Hb_001638_290

Information

Type rubber biosynthesis
Description Gene Name: Pyruvate dehydrogenase
Location Contig1638: 217100-220542
Sequence    

Annotation

kegg
ID rcu:RCOM_1339660
description pyruvate dehydrogenase, putative (EC:1.2.4.1)
nr
ID XP_002515074.1
description pyruvate dehydrogenase, putative [Ricinus communis]
swissprot
ID O24457
description Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic OS=Arabidopsis thaliana GN=PDH-E1 ALPHA PE=2 SV=1
trembl
ID B9RNK3
description Pyruvate dehydrogenase E1 component subunit alpha OS=Ricinus communis GN=RCOM_1339660 PE=4 SV=1
Gene Ontology
ID GO:0009570
description pyruvate dehydrogenase e1 component subunit alpha- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15029: 217139-220825 , PASA_asmbl_15032: 219027-219227
cDNA
(Sanger)
(ID:Location)		 001_H03.ab1: 217442-218712 , 014_L22.ab1: 217442-218718 , 030_I08.ab1: 217442-218708 , 035_J24.ab1: 217393-218661 , 037_K11.ab1: 217393-218691 , 040_N08.ab1: 217326-218613

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_290 0.0 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
2 Hb_000922_330 0.1027572657 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
3 Hb_003641_050 0.1114105088 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
4 Hb_000679_130 0.1125080115 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_008695_020 0.1127502729 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
6 Hb_034482_030 0.1135253737 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
7 Hb_014720_160 0.1150871912 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
8 Hb_073171_040 0.1167334574 - - malic enzyme, putative [Ricinus communis]
9 Hb_000649_050 0.117680174 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
10 Hb_001983_030 0.1210947209 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
11 Hb_000056_040 0.1240934296 - - PREDICTED: protein IQ-DOMAIN 31 [Jatropha curcas]
12 Hb_001357_090 0.127090957 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
13 Hb_005829_010 0.127779892 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
14 Hb_007904_120 0.1286652844 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
15 Hb_030312_080 0.1315917206 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
16 Hb_000322_090 0.1321108966 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
17 Hb_001616_080 0.1340333687 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
18 Hb_005867_060 0.1349352923 - - PREDICTED: NADPH--cytochrome P450 reductase [Jatropha curcas]
19 Hb_000665_160 0.1355591115 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
20 Hb_004884_070 0.1362592148 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_290 Hb_001638_290 Hb_000922_330 Hb_000922_330 Hb_001638_290--Hb_000922_330 Hb_003641_050 Hb_003641_050 Hb_001638_290--Hb_003641_050 Hb_000679_130 Hb_000679_130 Hb_001638_290--Hb_000679_130 Hb_008695_020 Hb_008695_020 Hb_001638_290--Hb_008695_020 Hb_034482_030 Hb_034482_030 Hb_001638_290--Hb_034482_030 Hb_014720_160 Hb_014720_160 Hb_001638_290--Hb_014720_160 Hb_000922_330--Hb_003641_050 Hb_000922_330--Hb_014720_160 Hb_000085_060 Hb_000085_060 Hb_000922_330--Hb_000085_060 Hb_000922_330--Hb_000679_130 Hb_005662_030 Hb_005662_030 Hb_000922_330--Hb_005662_030 Hb_002527_030 Hb_002527_030 Hb_000922_330--Hb_002527_030 Hb_000481_040 Hb_000481_040 Hb_003641_050--Hb_000481_040 Hb_003641_050--Hb_005662_030 Hb_000649_050 Hb_000649_050 Hb_003641_050--Hb_000649_050 Hb_007477_080 Hb_007477_080 Hb_003641_050--Hb_007477_080 Hb_001100_050 Hb_001100_050 Hb_003641_050--Hb_001100_050 Hb_000025_110 Hb_000025_110 Hb_000679_130--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000679_130--Hb_001444_010 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_007007_060 Hb_007007_060 Hb_008695_020--Hb_007007_060 Hb_009646_030 Hb_009646_030 Hb_008695_020--Hb_009646_030 Hb_000107_400 Hb_000107_400 Hb_008695_020--Hb_000107_400 Hb_005993_050 Hb_005993_050 Hb_008695_020--Hb_005993_050 Hb_007904_120 Hb_007904_120 Hb_008695_020--Hb_007904_120 Hb_004055_150 Hb_004055_150 Hb_008695_020--Hb_004055_150 Hb_120762_010 Hb_120762_010 Hb_034482_030--Hb_120762_010 Hb_000056_040 Hb_000056_040 Hb_034482_030--Hb_000056_040 Hb_034482_030--Hb_008695_020 Hb_000076_130 Hb_000076_130 Hb_034482_030--Hb_000076_130 Hb_001213_130 Hb_001213_130 Hb_034482_030--Hb_001213_130 Hb_007547_010 Hb_007547_010 Hb_014720_160--Hb_007547_010 Hb_014720_160--Hb_000085_060 Hb_003609_040 Hb_003609_040 Hb_014720_160--Hb_003609_040 Hb_000001_020 Hb_000001_020 Hb_014720_160--Hb_000001_020 Hb_014720_160--Hb_005662_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
171.748 27.5201 91.684 52.4825 144.629 121.892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.827 43.3603 87.8726 24.5918 101.223

CAGE analysis