Hb_034482_030

Information

Type -
Description -
Location Contig34482: 47853-49019
Sequence    

Annotation

kegg
ID rcu:RCOM_0741740
description histidyl-tRNA synthetase, putative (EC:6.1.1.21)
nr
ID XP_012076990.1
description PREDICTED: histidine--tRNA ligase [Jatropha curcas]
swissprot
ID P93422
description Histidine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os05g0150900 PE=2 SV=2
trembl
ID A0A067LMG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17211 PE=3 SV=1
Gene Ontology
ID GO:0005737
description histidine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034482_030 0.0 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
2 Hb_001638_290 0.1135253737 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
3 Hb_120762_010 0.116409578 - - -
4 Hb_000056_040 0.13793463 - - PREDICTED: protein IQ-DOMAIN 31 [Jatropha curcas]
5 Hb_008695_020 0.1384627968 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
6 Hb_000076_130 0.1411619289 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
7 Hb_001213_130 0.1432378651 - - PREDICTED: fructokinase-like 1, chloroplastic [Jatropha curcas]
8 Hb_024570_010 0.1458254563 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
9 Hb_001975_090 0.1466239071 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
10 Hb_000080_120 0.146825099 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
11 Hb_068804_100 0.1484858363 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
12 Hb_000665_160 0.1496780152 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
13 Hb_002909_050 0.1508000389 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001604_120 0.1537982551 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
15 Hb_004398_030 0.1555528685 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
16 Hb_000365_070 0.1556802824 - - PREDICTED: SWR1 complex subunit 2 [Jatropha curcas]
17 Hb_004951_070 0.1561897387 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
18 Hb_000983_160 0.1562564646 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
19 Hb_000679_130 0.156351095 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_000819_080 0.156611302 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_034482_030 Hb_034482_030 Hb_001638_290 Hb_001638_290 Hb_034482_030--Hb_001638_290 Hb_120762_010 Hb_120762_010 Hb_034482_030--Hb_120762_010 Hb_000056_040 Hb_000056_040 Hb_034482_030--Hb_000056_040 Hb_008695_020 Hb_008695_020 Hb_034482_030--Hb_008695_020 Hb_000076_130 Hb_000076_130 Hb_034482_030--Hb_000076_130 Hb_001213_130 Hb_001213_130 Hb_034482_030--Hb_001213_130 Hb_000922_330 Hb_000922_330 Hb_001638_290--Hb_000922_330 Hb_003641_050 Hb_003641_050 Hb_001638_290--Hb_003641_050 Hb_000679_130 Hb_000679_130 Hb_001638_290--Hb_000679_130 Hb_001638_290--Hb_008695_020 Hb_014720_160 Hb_014720_160 Hb_001638_290--Hb_014720_160 Hb_120762_010--Hb_001213_130 Hb_004398_030 Hb_004398_030 Hb_120762_010--Hb_004398_030 Hb_120762_010--Hb_000056_040 Hb_000362_020 Hb_000362_020 Hb_120762_010--Hb_000362_020 Hb_006111_070 Hb_006111_070 Hb_120762_010--Hb_006111_070 Hb_000300_690 Hb_000300_690 Hb_000056_040--Hb_000300_690 Hb_004369_020 Hb_004369_020 Hb_000056_040--Hb_004369_020 Hb_004884_070 Hb_004884_070 Hb_000056_040--Hb_004884_070 Hb_001450_050 Hb_001450_050 Hb_000056_040--Hb_001450_050 Hb_000599_180 Hb_000599_180 Hb_000056_040--Hb_000599_180 Hb_000056_040--Hb_001638_290 Hb_007007_060 Hb_007007_060 Hb_008695_020--Hb_007007_060 Hb_009646_030 Hb_009646_030 Hb_008695_020--Hb_009646_030 Hb_000107_400 Hb_000107_400 Hb_008695_020--Hb_000107_400 Hb_005993_050 Hb_005993_050 Hb_008695_020--Hb_005993_050 Hb_007904_120 Hb_007904_120 Hb_008695_020--Hb_007904_120 Hb_004055_150 Hb_004055_150 Hb_008695_020--Hb_004055_150 Hb_000665_160 Hb_000665_160 Hb_000076_130--Hb_000665_160 Hb_000544_010 Hb_000544_010 Hb_000076_130--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000076_130--Hb_002909_050 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_001141_020 Hb_001141_020 Hb_000076_130--Hb_001141_020 Hb_001652_080 Hb_001652_080 Hb_001213_130--Hb_001652_080 Hb_000963_130 Hb_000963_130 Hb_001213_130--Hb_000963_130 Hb_000390_310 Hb_000390_310 Hb_001213_130--Hb_000390_310 Hb_000076_260 Hb_000076_260 Hb_001213_130--Hb_000076_260 Hb_032202_230 Hb_032202_230 Hb_001213_130--Hb_032202_230 Hb_000077_010 Hb_000077_010 Hb_001213_130--Hb_000077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.8712 0.602645 3.29958 0.845189 4.56107 3.16421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82211 1.33734 3.13196 1.40758 3.96077

CAGE analysis