Hb_000362_020

Information

Type transcription factor
Description TF Family: TCP
Location Contig362: 42018-43806
Sequence    

Annotation

kegg
ID rcu:RCOM_1693000
description hypothetical protein
nr
ID XP_002519561.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LPR5
description Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1
trembl
ID B9S0P2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1693000 PE=4 SV=1
Gene Ontology
ID GO:0007165
description transcription factor tcp4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37195: 41297-45736 , PASA_asmbl_37196: 42295-45736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_020 0.0 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
2 Hb_034482_030 0.163580886 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
3 Hb_120762_010 0.1676848213 - - -
4 Hb_001638_290 0.1911636303 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
5 Hb_005672_020 0.1963457856 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
6 Hb_004398_030 0.1994093643 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
7 Hb_000984_270 0.1995113142 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001232_150 0.2071033643 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
9 Hb_005527_010 0.2074107765 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_005276_130 0.2075160004 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000948_170 0.2115170466 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
12 Hb_000540_050 0.213394289 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
13 Hb_000175_590 0.2136422592 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
14 Hb_000135_030 0.2141552734 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
15 Hb_002163_040 0.2142147306 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002053_110 0.2146594542 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000080_120 0.2168246444 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
18 Hb_029695_110 0.2179633401 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
19 Hb_002217_260 0.2180070899 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
20 Hb_002639_140 0.2185304955 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000362_020 Hb_000362_020 Hb_034482_030 Hb_034482_030 Hb_000362_020--Hb_034482_030 Hb_120762_010 Hb_120762_010 Hb_000362_020--Hb_120762_010 Hb_001638_290 Hb_001638_290 Hb_000362_020--Hb_001638_290 Hb_005672_020 Hb_005672_020 Hb_000362_020--Hb_005672_020 Hb_004398_030 Hb_004398_030 Hb_000362_020--Hb_004398_030 Hb_000984_270 Hb_000984_270 Hb_000362_020--Hb_000984_270 Hb_034482_030--Hb_001638_290 Hb_034482_030--Hb_120762_010 Hb_000056_040 Hb_000056_040 Hb_034482_030--Hb_000056_040 Hb_008695_020 Hb_008695_020 Hb_034482_030--Hb_008695_020 Hb_000076_130 Hb_000076_130 Hb_034482_030--Hb_000076_130 Hb_001213_130 Hb_001213_130 Hb_034482_030--Hb_001213_130 Hb_120762_010--Hb_001213_130 Hb_120762_010--Hb_004398_030 Hb_120762_010--Hb_000056_040 Hb_006111_070 Hb_006111_070 Hb_120762_010--Hb_006111_070 Hb_000922_330 Hb_000922_330 Hb_001638_290--Hb_000922_330 Hb_003641_050 Hb_003641_050 Hb_001638_290--Hb_003641_050 Hb_000679_130 Hb_000679_130 Hb_001638_290--Hb_000679_130 Hb_001638_290--Hb_008695_020 Hb_014720_160 Hb_014720_160 Hb_001638_290--Hb_014720_160 Hb_002304_080 Hb_002304_080 Hb_005672_020--Hb_002304_080 Hb_000371_100 Hb_000371_100 Hb_005672_020--Hb_000371_100 Hb_001828_040 Hb_001828_040 Hb_005672_020--Hb_001828_040 Hb_001584_200 Hb_001584_200 Hb_005672_020--Hb_001584_200 Hb_021346_030 Hb_021346_030 Hb_005672_020--Hb_021346_030 Hb_002496_020 Hb_002496_020 Hb_005672_020--Hb_002496_020 Hb_001975_090 Hb_001975_090 Hb_004398_030--Hb_001975_090 Hb_007803_030 Hb_007803_030 Hb_004398_030--Hb_007803_030 Hb_006816_180 Hb_006816_180 Hb_004398_030--Hb_006816_180 Hb_000135_030 Hb_000135_030 Hb_004398_030--Hb_000135_030 Hb_000181_240 Hb_000181_240 Hb_004398_030--Hb_000181_240 Hb_000627_250 Hb_000627_250 Hb_004398_030--Hb_000627_250 Hb_001604_120 Hb_001604_120 Hb_000984_270--Hb_001604_120 Hb_006846_070 Hb_006846_070 Hb_000984_270--Hb_006846_070 Hb_000613_010 Hb_000613_010 Hb_000984_270--Hb_000613_010 Hb_000108_050 Hb_000108_050 Hb_000984_270--Hb_000108_050 Hb_000984_270--Hb_005672_020 Hb_000984_270--Hb_000135_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8609 1.85219 34.5395 4.65207 23.285 25.8215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8274 7.92719 19.7257 1.5708 43.6081

CAGE analysis