Hb_038011_010

Information

Type -
Description -
Location Contig38011: 163-837
Sequence    

Annotation

kegg
ID pop:POPTR_0031s004401
description hypothetical protein
nr
ID XP_006389286.1
description hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DYV2
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0031s004401g PE=4 SV=1
Gene Ontology
ID GO:0043531
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038011_010 0.0 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
2 Hb_090497_010 0.1515869668 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
3 Hb_073452_010 0.1776626363 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_048116_010 0.1853297839 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
5 Hb_011287_090 0.1928031304 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
6 Hb_099864_010 0.1951176284 - - Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_002326_050 0.2029540471 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]
8 Hb_004899_060 0.2037653408 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
9 Hb_003881_050 0.2048498991 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
10 Hb_085863_020 0.2073261385 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
11 Hb_000077_130 0.2109593501 - - PREDICTED: callose synthase 12 [Jatropha curcas]
12 Hb_000049_070 0.2124399723 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
13 Hb_022148_010 0.2140788044 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
14 Hb_005211_160 0.2206707149 - - Protein PNS1, putative [Ricinus communis]
15 Hb_182424_010 0.2232794814 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
16 Hb_000031_150 0.226040294 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
17 Hb_127003_010 0.2280026122 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
18 Hb_000041_150 0.229160795 - - Stachyose synthase precursor, putative [Ricinus communis]
19 Hb_181810_020 0.2322649078 - - -
20 Hb_000442_080 0.2337619886 - - hypothetical protein JCGZ_03373 [Jatropha curcas]

Gene co-expression network

sample Hb_038011_010 Hb_038011_010 Hb_090497_010 Hb_090497_010 Hb_038011_010--Hb_090497_010 Hb_073452_010 Hb_073452_010 Hb_038011_010--Hb_073452_010 Hb_048116_010 Hb_048116_010 Hb_038011_010--Hb_048116_010 Hb_011287_090 Hb_011287_090 Hb_038011_010--Hb_011287_090 Hb_099864_010 Hb_099864_010 Hb_038011_010--Hb_099864_010 Hb_002326_050 Hb_002326_050 Hb_038011_010--Hb_002326_050 Hb_004899_060 Hb_004899_060 Hb_090497_010--Hb_004899_060 Hb_003881_050 Hb_003881_050 Hb_090497_010--Hb_003881_050 Hb_000101_160 Hb_000101_160 Hb_090497_010--Hb_000101_160 Hb_000099_210 Hb_000099_210 Hb_090497_010--Hb_000099_210 Hb_012725_100 Hb_012725_100 Hb_090497_010--Hb_012725_100 Hb_000442_080 Hb_000442_080 Hb_073452_010--Hb_000442_080 Hb_000011_330 Hb_000011_330 Hb_073452_010--Hb_000011_330 Hb_000251_090 Hb_000251_090 Hb_073452_010--Hb_000251_090 Hb_002205_190 Hb_002205_190 Hb_073452_010--Hb_002205_190 Hb_008695_140 Hb_008695_140 Hb_073452_010--Hb_008695_140 Hb_000567_380 Hb_000567_380 Hb_073452_010--Hb_000567_380 Hb_001476_140 Hb_001476_140 Hb_048116_010--Hb_001476_140 Hb_003988_010 Hb_003988_010 Hb_048116_010--Hb_003988_010 Hb_000031_150 Hb_000031_150 Hb_048116_010--Hb_000031_150 Hb_004137_060 Hb_004137_060 Hb_048116_010--Hb_004137_060 Hb_010417_050 Hb_010417_050 Hb_048116_010--Hb_010417_050 Hb_189118_010 Hb_189118_010 Hb_048116_010--Hb_189118_010 Hb_000049_070 Hb_000049_070 Hb_011287_090--Hb_000049_070 Hb_002874_070 Hb_002874_070 Hb_011287_090--Hb_002874_070 Hb_000077_130 Hb_000077_130 Hb_011287_090--Hb_000077_130 Hb_000139_380 Hb_000139_380 Hb_011287_090--Hb_000139_380 Hb_000236_250 Hb_000236_250 Hb_011287_090--Hb_000236_250 Hb_006935_050 Hb_006935_050 Hb_011287_090--Hb_006935_050 Hb_182424_010 Hb_182424_010 Hb_099864_010--Hb_182424_010 Hb_000431_020 Hb_000431_020 Hb_099864_010--Hb_000431_020 Hb_011218_060 Hb_011218_060 Hb_099864_010--Hb_011218_060 Hb_127003_010 Hb_127003_010 Hb_099864_010--Hb_127003_010 Hb_099864_010--Hb_011287_090 Hb_002326_050--Hb_011287_090 Hb_002326_050--Hb_000077_130 Hb_003106_010 Hb_003106_010 Hb_002326_050--Hb_003106_010 Hb_185467_020 Hb_185467_020 Hb_002326_050--Hb_185467_020 Hb_170193_010 Hb_170193_010 Hb_002326_050--Hb_170193_010 Hb_002326_050--Hb_127003_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51919 0.745406 0.704643 1.46701 2.5984 4.14855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.285946 0.224812 6.07383 0.809321 0.736798

CAGE analysis