Hb_004899_060

Information

Type -
Description -
Location Contig4899: 48048-55279
Sequence    

Annotation

kegg
ID rcu:RCOM_0710230
description 46 kDa ketoavyl-ACP synthase (EC:2.3.1.41)
nr
ID XP_002516228.1
description 46 kDa ketoavyl-ACP synthase [Ricinus communis]
swissprot
ID Q9C9P4
description 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1
trembl
ID B9RR59
description 46 kDa ketoavyl-ACP synthase OS=Ricinus communis GN=RCOM_0710230 PE=3 SV=1
Gene Ontology
ID GO:0003824
description fatty acid biosynthesis 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45192: 49100-54663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_060 0.0 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
2 Hb_001366_120 0.1402821663 - - unknown [Zea mays]
3 Hb_005976_050 0.1679024483 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
4 Hb_003688_160 0.170855103 - - Presenilin-like family protein [Populus trichocarpa]
5 Hb_001143_190 0.1898565892 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
6 Hb_031862_130 0.1901917773 - - transcription factor, putative [Ricinus communis]
7 Hb_008695_140 0.1910455114 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
8 Hb_000251_090 0.1918782328 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
9 Hb_000853_400 0.1934715487 - - PREDICTED: CTP synthase [Jatropha curcas]
10 Hb_008778_010 0.1944940493 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_010427_010 0.1980812367 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
12 Hb_008159_010 0.1982833932 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]
13 Hb_000270_520 0.2003207588 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
14 Hb_000069_170 0.2008183271 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
15 Hb_089206_010 0.2008824676 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_004097_120 0.2025263294 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_000566_030 0.2034199012 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
18 Hb_038011_010 0.2037653408 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
19 Hb_000212_310 0.2056937436 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
20 Hb_000256_070 0.2084687019 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004899_060 Hb_004899_060 Hb_001366_120 Hb_001366_120 Hb_004899_060--Hb_001366_120 Hb_005976_050 Hb_005976_050 Hb_004899_060--Hb_005976_050 Hb_003688_160 Hb_003688_160 Hb_004899_060--Hb_003688_160 Hb_001143_190 Hb_001143_190 Hb_004899_060--Hb_001143_190 Hb_031862_130 Hb_031862_130 Hb_004899_060--Hb_031862_130 Hb_008695_140 Hb_008695_140 Hb_004899_060--Hb_008695_140 Hb_001366_120--Hb_005976_050 Hb_000069_170 Hb_000069_170 Hb_001366_120--Hb_000069_170 Hb_001606_080 Hb_001606_080 Hb_001366_120--Hb_001606_080 Hb_078897_010 Hb_078897_010 Hb_001366_120--Hb_078897_010 Hb_001366_120--Hb_031862_130 Hb_010427_010 Hb_010427_010 Hb_005976_050--Hb_010427_010 Hb_000212_310 Hb_000212_310 Hb_005976_050--Hb_000212_310 Hb_000031_150 Hb_000031_150 Hb_005976_050--Hb_000031_150 Hb_007904_160 Hb_007904_160 Hb_005976_050--Hb_007904_160 Hb_000933_060 Hb_000933_060 Hb_005976_050--Hb_000933_060 Hb_000330_100 Hb_000330_100 Hb_005976_050--Hb_000330_100 Hb_052689_010 Hb_052689_010 Hb_003688_160--Hb_052689_010 Hb_174473_010 Hb_174473_010 Hb_003688_160--Hb_174473_010 Hb_001242_090 Hb_001242_090 Hb_003688_160--Hb_001242_090 Hb_000251_090 Hb_000251_090 Hb_003688_160--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_003688_160--Hb_089206_010 Hb_000019_150 Hb_000019_150 Hb_001143_190--Hb_000019_150 Hb_002809_050 Hb_002809_050 Hb_001143_190--Hb_002809_050 Hb_002909_140 Hb_002909_140 Hb_001143_190--Hb_002909_140 Hb_001004_070 Hb_001004_070 Hb_001143_190--Hb_001004_070 Hb_007416_330 Hb_007416_330 Hb_001143_190--Hb_007416_330 Hb_000025_030 Hb_000025_030 Hb_001143_190--Hb_000025_030 Hb_000215_080 Hb_000215_080 Hb_031862_130--Hb_000215_080 Hb_031862_130--Hb_000069_170 Hb_031862_130--Hb_008695_140 Hb_000011_330 Hb_000011_330 Hb_031862_130--Hb_000011_330 Hb_000723_200 Hb_000723_200 Hb_031862_130--Hb_000723_200 Hb_005542_060 Hb_005542_060 Hb_031862_130--Hb_005542_060 Hb_000567_380 Hb_000567_380 Hb_008695_140--Hb_000567_380 Hb_002205_190 Hb_002205_190 Hb_008695_140--Hb_002205_190 Hb_007765_020 Hb_007765_020 Hb_008695_140--Hb_007765_020 Hb_008695_140--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_008695_140--Hb_001946_410 Hb_004785_140 Hb_004785_140 Hb_008695_140--Hb_004785_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.36854 4.34814 5.54472 10.6503 5.57375 9.641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55037 0.459935 22.305 8.25907 4.67534

CAGE analysis