Hb_000069_170

Information

Type transcription factor
Description TF Family: ARF
Location Contig69: 147024-151813
Sequence    

Annotation

kegg
ID tcc:TCM_005126
description Auxin response factor 11 isoform 1
nr
ID XP_012083194.1
description PREDICTED: auxin response factor 18 [Jatropha curcas]
swissprot
ID Q9XED8
description Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=1 SV=1
trembl
ID A0A067K091
description Auxin response factor OS=Jatropha curcas GN=JCGZ_14244 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 18 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54187: 148260-148366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_170 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
2 Hb_031862_130 0.1226010229 - - transcription factor, putative [Ricinus communis]
3 Hb_002194_090 0.1305386475 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000215_080 0.1499036904 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
5 Hb_001662_060 0.1533548743 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
6 Hb_007765_020 0.1690118818 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
7 Hb_008695_140 0.1799106907 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
8 Hb_000092_010 0.183778256 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
9 Hb_000723_200 0.1854689952 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
10 Hb_004586_210 0.1859362392 - - transcription factor, putative [Ricinus communis]
11 Hb_002110_020 0.186203632 - - PREDICTED: transcription factor bHLH145 [Jatropha curcas]
12 Hb_000130_050 0.1886163043 - - 14-3-3 protein, putative [Ricinus communis]
13 Hb_001366_120 0.1898156686 - - unknown [Zea mays]
14 Hb_005542_060 0.1930783943 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000096_010 0.194053999 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
16 Hb_000011_330 0.1945136706 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
17 Hb_000138_110 0.1957405422 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
18 Hb_005211_160 0.198578278 - - Protein PNS1, putative [Ricinus communis]
19 Hb_006711_060 0.2007393401 - - Tubulin beta-1 chain [Morus notabilis]
20 Hb_004899_060 0.2008183271 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]

Gene co-expression network

sample Hb_000069_170 Hb_000069_170 Hb_031862_130 Hb_031862_130 Hb_000069_170--Hb_031862_130 Hb_002194_090 Hb_002194_090 Hb_000069_170--Hb_002194_090 Hb_000215_080 Hb_000215_080 Hb_000069_170--Hb_000215_080 Hb_001662_060 Hb_001662_060 Hb_000069_170--Hb_001662_060 Hb_007765_020 Hb_007765_020 Hb_000069_170--Hb_007765_020 Hb_008695_140 Hb_008695_140 Hb_000069_170--Hb_008695_140 Hb_031862_130--Hb_000215_080 Hb_031862_130--Hb_008695_140 Hb_000011_330 Hb_000011_330 Hb_031862_130--Hb_000011_330 Hb_000723_200 Hb_000723_200 Hb_031862_130--Hb_000723_200 Hb_005542_060 Hb_005542_060 Hb_031862_130--Hb_005542_060 Hb_000130_050 Hb_000130_050 Hb_002194_090--Hb_000130_050 Hb_000805_290 Hb_000805_290 Hb_002194_090--Hb_000805_290 Hb_002194_090--Hb_001662_060 Hb_003680_190 Hb_003680_190 Hb_002194_090--Hb_003680_190 Hb_002272_280 Hb_002272_280 Hb_002194_090--Hb_002272_280 Hb_000215_080--Hb_008695_140 Hb_001946_410 Hb_001946_410 Hb_000215_080--Hb_001946_410 Hb_005285_020 Hb_005285_020 Hb_000215_080--Hb_005285_020 Hb_000215_080--Hb_005542_060 Hb_001662_060--Hb_007765_020 Hb_004079_030 Hb_004079_030 Hb_001662_060--Hb_004079_030 Hb_008159_010 Hb_008159_010 Hb_001662_060--Hb_008159_010 Hb_000059_050 Hb_000059_050 Hb_001662_060--Hb_000059_050 Hb_001662_060--Hb_000130_050 Hb_000092_010 Hb_000092_010 Hb_001662_060--Hb_000092_010 Hb_007765_020--Hb_000092_010 Hb_003976_030 Hb_003976_030 Hb_007765_020--Hb_003976_030 Hb_001014_040 Hb_001014_040 Hb_007765_020--Hb_001014_040 Hb_007765_020--Hb_004079_030 Hb_005625_020 Hb_005625_020 Hb_007765_020--Hb_005625_020 Hb_000567_380 Hb_000567_380 Hb_008695_140--Hb_000567_380 Hb_002205_190 Hb_002205_190 Hb_008695_140--Hb_002205_190 Hb_008695_140--Hb_007765_020 Hb_008695_140--Hb_000011_330 Hb_008695_140--Hb_001946_410 Hb_004785_140 Hb_004785_140 Hb_008695_140--Hb_004785_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.68834 4.21016 8.00576 11.4472 5.57585 8.73791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.60534 4.46819 32.5171 4.72699 1.48919

CAGE analysis