Hb_001662_060

Information

Type -
Description -
Location Contig1662: 80816-81882
Sequence    

Annotation

kegg
ID tcc:TCM_000112
description G-box binding factor 3, putative isoform 1
nr
ID XP_007046566.1
description SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
swissprot
ID Q7JUR6
description Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1
trembl
ID A0A061DL92
description G-box binding factor 3, putative isoform 1 OS=Theobroma cacao GN=TCM_000112 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ganglioside-induced differentiation-associated protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15328: 80564-81850
cDNA
(Sanger)
(ID:Location)		 040_O09.ab1: 80862-81850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_060 0.0 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
2 Hb_007765_020 0.1112192551 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
3 Hb_004079_030 0.1202915006 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
4 Hb_008159_010 0.1233832565 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]
5 Hb_000059_050 0.1306479351 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
6 Hb_000130_050 0.1379669448 - - 14-3-3 protein, putative [Ricinus communis]
7 Hb_000092_010 0.1403229222 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
8 Hb_003992_170 0.1403893345 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
9 Hb_000096_010 0.1440528378 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
10 Hb_000138_110 0.1448004273 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
11 Hb_008695_140 0.1456592389 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
12 Hb_000538_070 0.1506219173 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
13 Hb_119600_070 0.1514723903 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
14 Hb_031862_130 0.1517903539 - - transcription factor, putative [Ricinus communis]
15 Hb_006711_060 0.1532995515 - - Tubulin beta-1 chain [Morus notabilis]
16 Hb_000069_170 0.1533548743 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
17 Hb_005542_060 0.1548258892 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_005625_020 0.1581543823 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
19 Hb_000749_270 0.1603187361 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
20 Hb_000359_010 0.1607960569 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]

Gene co-expression network

sample Hb_001662_060 Hb_001662_060 Hb_007765_020 Hb_007765_020 Hb_001662_060--Hb_007765_020 Hb_004079_030 Hb_004079_030 Hb_001662_060--Hb_004079_030 Hb_008159_010 Hb_008159_010 Hb_001662_060--Hb_008159_010 Hb_000059_050 Hb_000059_050 Hb_001662_060--Hb_000059_050 Hb_000130_050 Hb_000130_050 Hb_001662_060--Hb_000130_050 Hb_000092_010 Hb_000092_010 Hb_001662_060--Hb_000092_010 Hb_007765_020--Hb_000092_010 Hb_003976_030 Hb_003976_030 Hb_007765_020--Hb_003976_030 Hb_001014_040 Hb_001014_040 Hb_007765_020--Hb_001014_040 Hb_007765_020--Hb_004079_030 Hb_005625_020 Hb_005625_020 Hb_007765_020--Hb_005625_020 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_004079_030--Hb_000059_050 Hb_002005_020 Hb_002005_020 Hb_004079_030--Hb_002005_020 Hb_119600_070 Hb_119600_070 Hb_004079_030--Hb_119600_070 Hb_164010_030 Hb_164010_030 Hb_008159_010--Hb_164010_030 Hb_000096_010 Hb_000096_010 Hb_008159_010--Hb_000096_010 Hb_008159_010--Hb_004079_030 Hb_006162_010 Hb_006162_010 Hb_008159_010--Hb_006162_010 Hb_000076_140 Hb_000076_140 Hb_008159_010--Hb_000076_140 Hb_003992_170 Hb_003992_170 Hb_000059_050--Hb_003992_170 Hb_000059_050--Hb_119600_070 Hb_001946_330 Hb_001946_330 Hb_000059_050--Hb_001946_330 Hb_000066_080 Hb_000066_080 Hb_000059_050--Hb_000066_080 Hb_000047_030 Hb_000047_030 Hb_000059_050--Hb_000047_030 Hb_000130_050--Hb_000096_010 Hb_000130_050--Hb_001014_040 Hb_000108_070 Hb_000108_070 Hb_000130_050--Hb_000108_070 Hb_000538_070 Hb_000538_070 Hb_000130_050--Hb_000538_070 Hb_000130_050--Hb_004079_030 Hb_000161_060 Hb_000161_060 Hb_000130_050--Hb_000161_060 Hb_000092_010--Hb_000138_110 Hb_000092_010--Hb_003976_030 Hb_012325_020 Hb_012325_020 Hb_000092_010--Hb_012325_020 Hb_000723_130 Hb_000723_130 Hb_000092_010--Hb_000723_130 Hb_000723_200 Hb_000723_200 Hb_000092_010--Hb_000723_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2929 5.38814 16.6074 28.3025 11.8003 25.0765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3722 14.0768 70.4989 13.3966 18.0851

CAGE analysis