Hb_000723_200

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig723: 196442-202008
Sequence    

Annotation

kegg
ID rcu:RCOM_1355420
description hypothetical protein
nr
ID XP_012082380.1
description PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
swissprot
ID Q9FFY9
description Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1
trembl
ID A0A067JZ12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16526 PE=4 SV=1
Gene Ontology
ID GO:0003677
description telomere repeat-binding protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55771: 194589-201930 , PASA_asmbl_55772: 194617-197525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_200 0.0 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
2 Hb_003976_030 0.0879369818 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
3 Hb_000571_110 0.0898999501 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
4 Hb_000092_010 0.0934732166 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
5 Hb_000723_130 0.1000411091 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
6 Hb_006017_010 0.1020445252 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
7 Hb_004204_170 0.1025353611 - - synaptosomal associated protein, putative [Ricinus communis]
8 Hb_000646_050 0.1038455659 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
9 Hb_000011_330 0.1094047538 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
10 Hb_006915_030 0.1119751656 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
11 Hb_007765_020 0.1135578991 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
12 Hb_003862_050 0.1137171987 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
13 Hb_001617_050 0.1137758825 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
14 Hb_005348_140 0.1147434719 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
15 Hb_001143_190 0.115242703 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
16 Hb_029799_010 0.1162625034 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_002830_030 0.1168164983 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
18 Hb_050622_050 0.1177964419 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
19 Hb_002809_050 0.1180825145 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
20 Hb_028089_010 0.1182365077 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]

Gene co-expression network

sample Hb_000723_200 Hb_000723_200 Hb_003976_030 Hb_003976_030 Hb_000723_200--Hb_003976_030 Hb_000571_110 Hb_000571_110 Hb_000723_200--Hb_000571_110 Hb_000092_010 Hb_000092_010 Hb_000723_200--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000723_200--Hb_000723_130 Hb_006017_010 Hb_006017_010 Hb_000723_200--Hb_006017_010 Hb_004204_170 Hb_004204_170 Hb_000723_200--Hb_004204_170 Hb_003976_030--Hb_000092_010 Hb_012325_020 Hb_012325_020 Hb_003976_030--Hb_012325_020 Hb_000280_080 Hb_000280_080 Hb_003976_030--Hb_000280_080 Hb_000011_330 Hb_000011_330 Hb_003976_030--Hb_000011_330 Hb_005348_140 Hb_005348_140 Hb_003976_030--Hb_005348_140 Hb_001892_020 Hb_001892_020 Hb_003976_030--Hb_001892_020 Hb_006915_030 Hb_006915_030 Hb_000571_110--Hb_006915_030 Hb_000571_110--Hb_000723_130 Hb_028089_010 Hb_028089_010 Hb_000571_110--Hb_028089_010 Hb_009548_020 Hb_009548_020 Hb_000571_110--Hb_009548_020 Hb_012022_090 Hb_012022_090 Hb_000571_110--Hb_012022_090 Hb_000138_110 Hb_000138_110 Hb_000092_010--Hb_000138_110 Hb_007765_020 Hb_007765_020 Hb_000092_010--Hb_007765_020 Hb_000092_010--Hb_012325_020 Hb_000092_010--Hb_000723_130 Hb_002311_040 Hb_002311_040 Hb_000723_130--Hb_002311_040 Hb_000723_130--Hb_006915_030 Hb_000723_130--Hb_009548_020 Hb_002942_100 Hb_002942_100 Hb_000723_130--Hb_002942_100 Hb_000832_020 Hb_000832_020 Hb_000723_130--Hb_000832_020 Hb_007416_330 Hb_007416_330 Hb_006017_010--Hb_007416_330 Hb_004117_260 Hb_004117_260 Hb_006017_010--Hb_004117_260 Hb_050622_050 Hb_050622_050 Hb_006017_010--Hb_050622_050 Hb_105105_020 Hb_105105_020 Hb_006017_010--Hb_105105_020 Hb_006017_010--Hb_006915_030 Hb_015934_040 Hb_015934_040 Hb_006017_010--Hb_015934_040 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_000085_100 Hb_000085_100 Hb_004204_170--Hb_000085_100 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_001178_140 Hb_001178_140 Hb_004204_170--Hb_001178_140 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9615 29.4666 36.2594 30.5963 26.7144 37.7016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.5892 21.5383 80.8738 24.446 22.7115

CAGE analysis