Hb_008159_010

Information

Type -
Description -
Location Contig8159: 24759-40977
Sequence    

Annotation

kegg
ID rcu:RCOM_1072140
description WD-repeat protein, putative
nr
ID XP_012068431.1
description PREDICTED: 66 kDa stress protein [Jatropha curcas]
swissprot
ID P90587
description 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1
trembl
ID A0A067KY40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03617 PE=4 SV=1
Gene Ontology
ID GO:0005829
description 66 kda stress protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59384: 24799-32810 , PASA_asmbl_59385: 29452-29766 , PASA_asmbl_59386: 24893-40977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008159_010 0.0 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]
2 Hb_164010_030 0.1121111853 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
3 Hb_001662_060 0.1233832565 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
4 Hb_000096_010 0.1242171591 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
5 Hb_004079_030 0.1246620511 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
6 Hb_006162_010 0.1251673105 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
7 Hb_000076_140 0.1256194488 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_008176_010 0.1282333901 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
9 Hb_010344_050 0.1303604642 - - Adagio 1 -like protein [Gossypium arboreum]
10 Hb_000260_010 0.1304469954 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
11 Hb_000406_140 0.1313394159 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000538_070 0.1318044784 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
13 Hb_008695_140 0.1335795122 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
14 Hb_000138_110 0.1371317818 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
15 Hb_000471_110 0.1380165882 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
16 Hb_000521_130 0.1382361659 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
17 Hb_001898_080 0.1389200508 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
18 Hb_000085_400 0.1392622629 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
19 Hb_001936_130 0.140000248 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
20 Hb_001021_040 0.141073227 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_008159_010 Hb_008159_010 Hb_164010_030 Hb_164010_030 Hb_008159_010--Hb_164010_030 Hb_001662_060 Hb_001662_060 Hb_008159_010--Hb_001662_060 Hb_000096_010 Hb_000096_010 Hb_008159_010--Hb_000096_010 Hb_004079_030 Hb_004079_030 Hb_008159_010--Hb_004079_030 Hb_006162_010 Hb_006162_010 Hb_008159_010--Hb_006162_010 Hb_000076_140 Hb_000076_140 Hb_008159_010--Hb_000076_140 Hb_000497_300 Hb_000497_300 Hb_164010_030--Hb_000497_300 Hb_000116_260 Hb_000116_260 Hb_164010_030--Hb_000116_260 Hb_001377_490 Hb_001377_490 Hb_164010_030--Hb_001377_490 Hb_001163_100 Hb_001163_100 Hb_164010_030--Hb_001163_100 Hb_000260_010 Hb_000260_010 Hb_164010_030--Hb_000260_010 Hb_001014_030 Hb_001014_030 Hb_164010_030--Hb_001014_030 Hb_007765_020 Hb_007765_020 Hb_001662_060--Hb_007765_020 Hb_001662_060--Hb_004079_030 Hb_000059_050 Hb_000059_050 Hb_001662_060--Hb_000059_050 Hb_000130_050 Hb_000130_050 Hb_001662_060--Hb_000130_050 Hb_000092_010 Hb_000092_010 Hb_001662_060--Hb_000092_010 Hb_000538_070 Hb_000538_070 Hb_000096_010--Hb_000538_070 Hb_000749_220 Hb_000749_220 Hb_000096_010--Hb_000749_220 Hb_000096_010--Hb_000130_050 Hb_003177_030 Hb_003177_030 Hb_000096_010--Hb_003177_030 Hb_002809_050 Hb_002809_050 Hb_000096_010--Hb_002809_050 Hb_002998_060 Hb_002998_060 Hb_000096_010--Hb_002998_060 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_004079_030--Hb_000059_050 Hb_002005_020 Hb_002005_020 Hb_004079_030--Hb_002005_020 Hb_119600_070 Hb_119600_070 Hb_004079_030--Hb_119600_070 Hb_024128_020 Hb_024128_020 Hb_006162_010--Hb_024128_020 Hb_000300_290 Hb_000300_290 Hb_006162_010--Hb_000300_290 Hb_001390_130 Hb_001390_130 Hb_006162_010--Hb_001390_130 Hb_006162_010--Hb_164010_030 Hb_007416_060 Hb_007416_060 Hb_006162_010--Hb_007416_060 Hb_006162_010--Hb_004079_030 Hb_004607_050 Hb_004607_050 Hb_000076_140--Hb_004607_050 Hb_000340_390 Hb_000340_390 Hb_000076_140--Hb_000340_390 Hb_000999_050 Hb_000999_050 Hb_000076_140--Hb_000999_050 Hb_003370_050 Hb_003370_050 Hb_000076_140--Hb_003370_050 Hb_001268_110 Hb_001268_110 Hb_000076_140--Hb_001268_110 Hb_001898_080 Hb_001898_080 Hb_000076_140--Hb_001898_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7962 16.8156 15.5386 49.6579 19.0664 32.0012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7055 23.2495 86.236 34.8164 31.7391

CAGE analysis