Hb_003370_050

Information

Type -
Description -
Location Contig3370: 81424-82386
Sequence    

Annotation

kegg
ID fve:101312996
description uncharacterized protein LOC101312996
nr
ID XP_008777651.1
description PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID M1ANN9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010334 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35276: 50539-83538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003370_050 0.0 - - PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]
2 Hb_004449_080 0.0700194785 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
3 Hb_004020_020 0.0799439185 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
4 Hb_000028_390 0.0858855655 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
5 Hb_000999_050 0.0964135511 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
6 Hb_004607_050 0.09715837 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_003294_090 0.1011853251 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000174_180 0.1043738461 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_164898_010 0.108668071 - - Cysteine-rich protein, putative [Theobroma cacao]
10 Hb_004837_130 0.1100446254 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
11 Hb_001268_110 0.1108788474 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
12 Hb_098315_080 0.1148936027 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
13 Hb_000352_340 0.1155060755 - - PREDICTED: importin-13 [Jatropha curcas]
14 Hb_012322_010 0.1162746941 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_006909_010 0.1171053723 - - 5-oxoprolinase, putative [Ricinus communis]
16 Hb_000140_210 0.1174055182 - - sec10, putative [Ricinus communis]
17 Hb_000069_210 0.1180485473 - - PREDICTED: exportin-2 [Jatropha curcas]
18 Hb_000866_170 0.1190742503 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_002667_050 0.1191428722 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
20 Hb_000483_220 0.1195896995 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003370_050 Hb_003370_050 Hb_004449_080 Hb_004449_080 Hb_003370_050--Hb_004449_080 Hb_004020_020 Hb_004020_020 Hb_003370_050--Hb_004020_020 Hb_000028_390 Hb_000028_390 Hb_003370_050--Hb_000028_390 Hb_000999_050 Hb_000999_050 Hb_003370_050--Hb_000999_050 Hb_004607_050 Hb_004607_050 Hb_003370_050--Hb_004607_050 Hb_003294_090 Hb_003294_090 Hb_003370_050--Hb_003294_090 Hb_004449_080--Hb_000028_390 Hb_006909_010 Hb_006909_010 Hb_004449_080--Hb_006909_010 Hb_164898_010 Hb_164898_010 Hb_004449_080--Hb_164898_010 Hb_004449_080--Hb_003294_090 Hb_019337_020 Hb_019337_020 Hb_004449_080--Hb_019337_020 Hb_002667_050 Hb_002667_050 Hb_004020_020--Hb_002667_050 Hb_004020_020--Hb_000028_390 Hb_002099_080 Hb_002099_080 Hb_004020_020--Hb_002099_080 Hb_004020_020--Hb_003294_090 Hb_007820_010 Hb_007820_010 Hb_004020_020--Hb_007820_010 Hb_009296_040 Hb_009296_040 Hb_000028_390--Hb_009296_040 Hb_001876_010 Hb_001876_010 Hb_000028_390--Hb_001876_010 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000011_060 Hb_000011_060 Hb_000028_390--Hb_000011_060 Hb_000999_050--Hb_004607_050 Hb_004994_220 Hb_004994_220 Hb_000999_050--Hb_004994_220 Hb_004837_130 Hb_004837_130 Hb_000999_050--Hb_004837_130 Hb_002740_180 Hb_002740_180 Hb_000999_050--Hb_002740_180 Hb_006938_080 Hb_006938_080 Hb_000999_050--Hb_006938_080 Hb_001009_170 Hb_001009_170 Hb_000999_050--Hb_001009_170 Hb_000866_170 Hb_000866_170 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_004607_050--Hb_006938_080 Hb_003253_040 Hb_003253_040 Hb_003294_090--Hb_003253_040 Hb_005901_020 Hb_005901_020 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_002063_020 Hb_002063_020 Hb_003294_090--Hb_002063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92452 3.82752 0.961811 5.04457 2.88162 5.41478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05107 2.74998 8.04452 7.24551 5.51445

CAGE analysis