Hb_000300_290

Information

Type -
Description -
Location Contig300: 256267-265912
Sequence    

Annotation

kegg
ID rcu:RCOM_1321460
description hypothetical protein
nr
ID XP_012070394.1
description PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02673 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31578: 256284-257306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_290 0.0 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
2 Hb_006162_010 0.0852345482 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
3 Hb_002111_040 0.1099560236 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
4 Hb_002842_020 0.1151772834 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
5 Hb_000053_100 0.1161715519 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
6 Hb_000023_090 0.1167756726 - - mak, putative [Ricinus communis]
7 Hb_001006_020 0.1174935155 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
8 Hb_005305_110 0.118419338 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
9 Hb_002284_230 0.1194269665 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
10 Hb_019654_030 0.1203640567 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
11 Hb_009193_030 0.1207534912 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
12 Hb_001390_130 0.1214970356 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
13 Hb_000046_350 0.1216037199 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002422_070 0.123452157 - - PREDICTED: putative protein TPRXL [Malus domestica]
15 Hb_001904_090 0.123731156 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
16 Hb_006420_100 0.1261338537 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
17 Hb_001512_010 0.1266912074 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
18 Hb_024128_020 0.1271073239 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
19 Hb_005092_060 0.1276771666 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
20 Hb_000922_390 0.127728891 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_290 Hb_000300_290 Hb_006162_010 Hb_006162_010 Hb_000300_290--Hb_006162_010 Hb_002111_040 Hb_002111_040 Hb_000300_290--Hb_002111_040 Hb_002842_020 Hb_002842_020 Hb_000300_290--Hb_002842_020 Hb_000053_100 Hb_000053_100 Hb_000300_290--Hb_000053_100 Hb_000023_090 Hb_000023_090 Hb_000300_290--Hb_000023_090 Hb_001006_020 Hb_001006_020 Hb_000300_290--Hb_001006_020 Hb_024128_020 Hb_024128_020 Hb_006162_010--Hb_024128_020 Hb_001390_130 Hb_001390_130 Hb_006162_010--Hb_001390_130 Hb_164010_030 Hb_164010_030 Hb_006162_010--Hb_164010_030 Hb_007416_060 Hb_007416_060 Hb_006162_010--Hb_007416_060 Hb_004079_030 Hb_004079_030 Hb_006162_010--Hb_004079_030 Hb_000291_080 Hb_000291_080 Hb_002111_040--Hb_000291_080 Hb_005305_110 Hb_005305_110 Hb_002111_040--Hb_005305_110 Hb_000028_350 Hb_000028_350 Hb_002111_040--Hb_000028_350 Hb_031862_100 Hb_031862_100 Hb_002111_040--Hb_031862_100 Hb_002111_040--Hb_001390_130 Hb_006420_100 Hb_006420_100 Hb_002111_040--Hb_006420_100 Hb_000482_090 Hb_000482_090 Hb_002842_020--Hb_000482_090 Hb_000189_640 Hb_000189_640 Hb_002842_020--Hb_000189_640 Hb_002842_020--Hb_000023_090 Hb_000602_010 Hb_000602_010 Hb_002842_020--Hb_000602_010 Hb_019654_030 Hb_019654_030 Hb_002842_020--Hb_019654_030 Hb_002005_020 Hb_002005_020 Hb_002842_020--Hb_002005_020 Hb_007002_030 Hb_007002_030 Hb_000053_100--Hb_007002_030 Hb_001833_110 Hb_001833_110 Hb_000053_100--Hb_001833_110 Hb_012053_070 Hb_012053_070 Hb_000053_100--Hb_012053_070 Hb_002016_100 Hb_002016_100 Hb_000053_100--Hb_002016_100 Hb_024185_020 Hb_024185_020 Hb_000053_100--Hb_024185_020 Hb_001369_690 Hb_001369_690 Hb_000053_100--Hb_001369_690 Hb_000023_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000023_090--Hb_004218_110 Hb_148113_010 Hb_148113_010 Hb_000023_090--Hb_148113_010 Hb_000477_060 Hb_000477_060 Hb_000023_090--Hb_000477_060 Hb_000363_360 Hb_000363_360 Hb_000023_090--Hb_000363_360 Hb_003697_040 Hb_003697_040 Hb_000023_090--Hb_003697_040 Hb_000289_110 Hb_000289_110 Hb_001006_020--Hb_000289_110 Hb_005144_050 Hb_005144_050 Hb_001006_020--Hb_005144_050 Hb_000159_130 Hb_000159_130 Hb_001006_020--Hb_000159_130 Hb_001366_180 Hb_001366_180 Hb_001006_020--Hb_001366_180 Hb_002183_060 Hb_002183_060 Hb_001006_020--Hb_002183_060 Hb_000421_220 Hb_000421_220 Hb_001006_020--Hb_000421_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.85588 1.25407 1.57009 5.75426 3.60317 4.59206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.39038 5.30371 9.77905 6.32634 6.14787

CAGE analysis