Hb_002842_020

Information

Type -
Description -
Location Contig2842: 15224-21517
Sequence    

Annotation

kegg
ID rcu:RCOM_0843720
description Prolactin regulatory element-binding protein, putative (EC:1.3.1.74)
nr
ID XP_002526027.1
description Prolactin regulatory element-binding protein, putative [Ricinus communis]
swissprot
ID Q39221
description SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4
trembl
ID B9SJ58
description Prolactin regulatory element-binding protein, putative OS=Ricinus communis GN=RCOM_0843720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29745: 10422-14957 , PASA_asmbl_29747: 18613-18790 , PASA_asmbl_29748: 15237-21675 , PASA_asmbl_29749: 21043-21156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002842_020 0.0 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
2 Hb_000482_090 0.1011990647 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
3 Hb_000189_640 0.1016622229 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
4 Hb_000023_090 0.1044454475 - - mak, putative [Ricinus communis]
5 Hb_000602_010 0.1061554281 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
6 Hb_019654_030 0.1087341758 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
7 Hb_002005_020 0.1090041888 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004920_120 0.1095017835 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000617_260 0.1103445566 rubber biosynthesis Gene Name: SRPP2 small rubber particle protein [Hevea brasiliensis]
10 Hb_048476_050 0.1107945027 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
11 Hb_000497_110 0.1110261942 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
12 Hb_064441_010 0.1146056708 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
13 Hb_000300_290 0.1151772834 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
14 Hb_001009_170 0.1171579465 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_003893_010 0.1175318928 - - hypothetical protein M569_16374 [Genlisea aurea]
16 Hb_005490_030 0.1179645838 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
17 Hb_011953_020 0.118798046 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
18 Hb_000260_810 0.119387533 - - -
19 Hb_000580_190 0.1194937467 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
20 Hb_004218_110 0.1195370802 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]

Gene co-expression network

sample Hb_002842_020 Hb_002842_020 Hb_000482_090 Hb_000482_090 Hb_002842_020--Hb_000482_090 Hb_000189_640 Hb_000189_640 Hb_002842_020--Hb_000189_640 Hb_000023_090 Hb_000023_090 Hb_002842_020--Hb_000023_090 Hb_000602_010 Hb_000602_010 Hb_002842_020--Hb_000602_010 Hb_019654_030 Hb_019654_030 Hb_002842_020--Hb_019654_030 Hb_002005_020 Hb_002005_020 Hb_002842_020--Hb_002005_020 Hb_000482_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000482_090--Hb_004218_110 Hb_001959_210 Hb_001959_210 Hb_000482_090--Hb_001959_210 Hb_002759_060 Hb_002759_060 Hb_000482_090--Hb_002759_060 Hb_004254_120 Hb_004254_120 Hb_000482_090--Hb_004254_120 Hb_172932_010 Hb_172932_010 Hb_000482_090--Hb_172932_010 Hb_003893_010 Hb_003893_010 Hb_000189_640--Hb_003893_010 Hb_002045_130 Hb_002045_130 Hb_000189_640--Hb_002045_130 Hb_000617_260 Hb_000617_260 Hb_000189_640--Hb_000617_260 Hb_000291_110 Hb_000291_110 Hb_000189_640--Hb_000291_110 Hb_000189_640--Hb_000602_010 Hb_000023_090--Hb_002005_020 Hb_000023_090--Hb_004218_110 Hb_148113_010 Hb_148113_010 Hb_000023_090--Hb_148113_010 Hb_000477_060 Hb_000477_060 Hb_000023_090--Hb_000477_060 Hb_000363_360 Hb_000363_360 Hb_000023_090--Hb_000363_360 Hb_003697_040 Hb_003697_040 Hb_000023_090--Hb_003697_040 Hb_000029_020 Hb_000029_020 Hb_000602_010--Hb_000029_020 Hb_002449_020 Hb_002449_020 Hb_000602_010--Hb_002449_020 Hb_000602_010--Hb_000482_090 Hb_002687_110 Hb_002687_110 Hb_000602_010--Hb_002687_110 Hb_001691_210 Hb_001691_210 Hb_000602_010--Hb_001691_210 Hb_000115_060 Hb_000115_060 Hb_000602_010--Hb_000115_060 Hb_009193_030 Hb_009193_030 Hb_019654_030--Hb_009193_030 Hb_019654_030--Hb_000363_360 Hb_005306_180 Hb_005306_180 Hb_019654_030--Hb_005306_180 Hb_002284_230 Hb_002284_230 Hb_019654_030--Hb_002284_230 Hb_003633_050 Hb_003633_050 Hb_019654_030--Hb_003633_050 Hb_000291_080 Hb_000291_080 Hb_019654_030--Hb_000291_080 Hb_002005_020--Hb_004218_110 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_000567_120 Hb_000567_120 Hb_002005_020--Hb_000567_120 Hb_001519_050 Hb_001519_050 Hb_002005_020--Hb_001519_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4991 6.96435 5.20748 21.0501 18.631 27.9311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1116 25.3855 49.1383 38.4815 13.2714

CAGE analysis