Hb_000053_100

Information

Type -
Description -
Location Contig53: 177258-185198
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010555mg
description hypothetical protein
nr
ID XP_012082152.1
description PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
swissprot
ID Q9SWS1
description Probable transmembrane ascorbate ferrireductase 2 OS=Arabidopsis thaliana GN=CYB561B PE=1 SV=1
trembl
ID A0A067JZF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18272 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable transmembrane ascorbate ferrireductase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47291: 177316-179926 , PASA_asmbl_47292: 180901-185133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_100 0.0 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
2 Hb_007002_030 0.0829126736 - - PREDICTED: transmembrane protein 205 [Jatropha curcas]
3 Hb_001833_110 0.0850571317 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012053_070 0.0891355462 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
5 Hb_002016_100 0.0893868615 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
6 Hb_024185_020 0.0900419078 - - -
7 Hb_001369_690 0.0905451772 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
8 Hb_002893_080 0.093465237 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
9 Hb_001832_010 0.0939094753 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
10 Hb_020400_050 0.0977630781 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
11 Hb_015807_040 0.0992354773 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
12 Hb_089995_010 0.1005019681 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
13 Hb_000656_110 0.1021043241 - - nucleolysin tia-1, putative [Ricinus communis]
14 Hb_000125_190 0.1031406859 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
15 Hb_000648_110 0.1050637197 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
16 Hb_000069_600 0.1055972936 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
17 Hb_000668_040 0.1063922882 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
18 Hb_008790_030 0.1071019372 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
19 Hb_004899_050 0.1076210869 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
20 Hb_015934_070 0.1079607708 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000053_100 Hb_000053_100 Hb_007002_030 Hb_007002_030 Hb_000053_100--Hb_007002_030 Hb_001833_110 Hb_001833_110 Hb_000053_100--Hb_001833_110 Hb_012053_070 Hb_012053_070 Hb_000053_100--Hb_012053_070 Hb_002016_100 Hb_002016_100 Hb_000053_100--Hb_002016_100 Hb_024185_020 Hb_024185_020 Hb_000053_100--Hb_024185_020 Hb_001369_690 Hb_001369_690 Hb_000053_100--Hb_001369_690 Hb_004899_050 Hb_004899_050 Hb_007002_030--Hb_004899_050 Hb_007002_030--Hb_002016_100 Hb_020400_050 Hb_020400_050 Hb_007002_030--Hb_020400_050 Hb_000347_030 Hb_000347_030 Hb_007002_030--Hb_000347_030 Hb_000125_190 Hb_000125_190 Hb_007002_030--Hb_000125_190 Hb_002759_060 Hb_002759_060 Hb_001833_110--Hb_002759_060 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050 Hb_000331_450 Hb_000331_450 Hb_012053_070--Hb_000331_450 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_001105_070 Hb_001105_070 Hb_012053_070--Hb_001105_070 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_000025_120 Hb_000025_120 Hb_002016_100--Hb_000025_120 Hb_000668_040 Hb_000668_040 Hb_002016_100--Hb_000668_040 Hb_002016_100--Hb_020400_050 Hb_002016_100--Hb_001833_110 Hb_002016_100--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_002016_100--Hb_000496_060 Hb_000206_210 Hb_000206_210 Hb_024185_020--Hb_000206_210 Hb_004254_120 Hb_004254_120 Hb_024185_020--Hb_004254_120 Hb_003032_040 Hb_003032_040 Hb_024185_020--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_009838_080 Hb_009838_080 Hb_024185_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_024185_020--Hb_000648_110 Hb_004218_110 Hb_004218_110 Hb_001369_690--Hb_004218_110 Hb_003125_010 Hb_003125_010 Hb_001369_690--Hb_003125_010 Hb_001369_690--Hb_000331_450 Hb_015934_070 Hb_015934_070 Hb_001369_690--Hb_015934_070 Hb_001369_690--Hb_012053_070 Hb_025240_040 Hb_025240_040 Hb_001369_690--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3965 4.58787 6.00464 14.0484 13.7012 13.5104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.5011 17.1301 19.488 14.0429 12.0425

CAGE analysis