Hb_020400_050

Information

Type -
Description -
Location Contig20400: 26331-27032
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12110g
description POPTRDRAFT_194941; hypothetical protein
nr
ID XP_011035767.1
description PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
swissprot
ID P0C8Q9
description Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3
trembl
ID B9H0C0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s12110g PE=4 SV=2
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20922: 26092-26442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020400_050 0.0 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
2 Hb_000125_190 0.073679659 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
3 Hb_000123_170 0.0769036362 - - Rab3 [Hevea brasiliensis]
4 Hb_002016_100 0.0837678732 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
5 Hb_000025_120 0.0845200945 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
6 Hb_002061_040 0.0846551443 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
7 Hb_012053_070 0.092921373 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
8 Hb_002851_020 0.0951827155 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
9 Hb_000668_040 0.0970499241 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
10 Hb_000053_100 0.0977630781 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
11 Hb_001105_070 0.100456185 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
12 Hb_001824_010 0.1007059185 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
13 Hb_000506_120 0.1030844967 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
14 Hb_000987_070 0.1033953274 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
15 Hb_001833_110 0.1056700222 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005736_060 0.1061940096 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
17 Hb_000207_400 0.1065901008 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
18 Hb_001832_010 0.1066169305 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
19 Hb_000635_150 0.1075712155 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
20 Hb_000000_460 0.1079468141 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]

Gene co-expression network

sample Hb_020400_050 Hb_020400_050 Hb_000125_190 Hb_000125_190 Hb_020400_050--Hb_000125_190 Hb_000123_170 Hb_000123_170 Hb_020400_050--Hb_000123_170 Hb_002016_100 Hb_002016_100 Hb_020400_050--Hb_002016_100 Hb_000025_120 Hb_000025_120 Hb_020400_050--Hb_000025_120 Hb_002061_040 Hb_002061_040 Hb_020400_050--Hb_002061_040 Hb_012053_070 Hb_012053_070 Hb_020400_050--Hb_012053_070 Hb_001519_050 Hb_001519_050 Hb_000125_190--Hb_001519_050 Hb_000635_150 Hb_000635_150 Hb_000125_190--Hb_000635_150 Hb_000125_190--Hb_002061_040 Hb_000125_190--Hb_000123_170 Hb_001833_110 Hb_001833_110 Hb_000125_190--Hb_001833_110 Hb_001396_100 Hb_001396_100 Hb_000123_170--Hb_001396_100 Hb_000123_170--Hb_000025_120 Hb_001904_090 Hb_001904_090 Hb_000123_170--Hb_001904_090 Hb_000668_040 Hb_000668_040 Hb_000123_170--Hb_000668_040 Hb_002016_100--Hb_000025_120 Hb_002016_100--Hb_000668_040 Hb_002016_100--Hb_001833_110 Hb_001105_070 Hb_001105_070 Hb_002016_100--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_002016_100--Hb_000496_060 Hb_000025_120--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000025_120--Hb_014720_080 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_000025_120--Hb_001105_070 Hb_000146_020 Hb_000146_020 Hb_000025_120--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_000025_120--Hb_000834_270 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_002061_040--Hb_001519_050 Hb_000009_460 Hb_000009_460 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040 Hb_000331_450 Hb_000331_450 Hb_012053_070--Hb_000331_450 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_012053_070--Hb_001105_070 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8646 8.43345 4.53771 15.088 10.2211 11.1355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.7136 25.4671 19.5623 13.4276 9.40036

CAGE analysis