Hb_005285_020

Information

Type -
Description -
Location Contig5285: 29585-29818
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47149: 29943-33266
cDNA
(Sanger)
(ID:Location)		 014_B22.ab1: 30095-33264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005285_020 0.0 - - -
2 Hb_000215_080 0.1469068524 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
3 Hb_008695_140 0.1585375341 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
4 Hb_031862_130 0.1600804039 - - transcription factor, putative [Ricinus communis]
5 Hb_000197_250 0.1660998399 - - Chaperone protein dnaJ, putative [Ricinus communis]
6 Hb_000854_040 0.169952884 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
7 Hb_000948_150 0.1756009651 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
8 Hb_000256_040 0.1757178363 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
9 Hb_006162_030 0.1787057289 - - PREDICTED: alpha-L-fucosidase 2-like isoform X1 [Populus euphratica]
10 Hb_024404_020 0.1805582826 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
11 Hb_003032_020 0.1814678884 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
12 Hb_000567_380 0.1814824858 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
13 Hb_000027_260 0.1831169019 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
14 Hb_001946_410 0.1850061516 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
15 Hb_007533_040 0.1886689707 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_000152_110 0.1918865297 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000120_640 0.1922420323 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_007810_010 0.1932054785 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
19 Hb_001357_200 0.1933183383 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
20 Hb_001404_110 0.1950305631 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005285_020 Hb_005285_020 Hb_000215_080 Hb_000215_080 Hb_005285_020--Hb_000215_080 Hb_008695_140 Hb_008695_140 Hb_005285_020--Hb_008695_140 Hb_031862_130 Hb_031862_130 Hb_005285_020--Hb_031862_130 Hb_000197_250 Hb_000197_250 Hb_005285_020--Hb_000197_250 Hb_000854_040 Hb_000854_040 Hb_005285_020--Hb_000854_040 Hb_000948_150 Hb_000948_150 Hb_005285_020--Hb_000948_150 Hb_000215_080--Hb_031862_130 Hb_000215_080--Hb_008695_140 Hb_001946_410 Hb_001946_410 Hb_000215_080--Hb_001946_410 Hb_005542_060 Hb_005542_060 Hb_000215_080--Hb_005542_060 Hb_000069_170 Hb_000069_170 Hb_000215_080--Hb_000069_170 Hb_000567_380 Hb_000567_380 Hb_008695_140--Hb_000567_380 Hb_002205_190 Hb_002205_190 Hb_008695_140--Hb_002205_190 Hb_007765_020 Hb_007765_020 Hb_008695_140--Hb_007765_020 Hb_000011_330 Hb_000011_330 Hb_008695_140--Hb_000011_330 Hb_008695_140--Hb_001946_410 Hb_004785_140 Hb_004785_140 Hb_008695_140--Hb_004785_140 Hb_031862_130--Hb_000069_170 Hb_031862_130--Hb_008695_140 Hb_031862_130--Hb_000011_330 Hb_000723_200 Hb_000723_200 Hb_031862_130--Hb_000723_200 Hb_031862_130--Hb_005542_060 Hb_003657_010 Hb_003657_010 Hb_000197_250--Hb_003657_010 Hb_000256_040 Hb_000256_040 Hb_000197_250--Hb_000256_040 Hb_005245_100 Hb_005245_100 Hb_000197_250--Hb_005245_100 Hb_004117_260 Hb_004117_260 Hb_000197_250--Hb_004117_260 Hb_000393_020 Hb_000393_020 Hb_000197_250--Hb_000393_020 Hb_006162_030 Hb_006162_030 Hb_000197_250--Hb_006162_030 Hb_001252_090 Hb_001252_090 Hb_000854_040--Hb_001252_090 Hb_003777_200 Hb_003777_200 Hb_000854_040--Hb_003777_200 Hb_000317_040 Hb_000317_040 Hb_000854_040--Hb_000317_040 Hb_001633_200 Hb_001633_200 Hb_000854_040--Hb_001633_200 Hb_001454_230 Hb_001454_230 Hb_000854_040--Hb_001454_230 Hb_000748_030 Hb_000748_030 Hb_000854_040--Hb_000748_030 Hb_000152_110 Hb_000152_110 Hb_000948_150--Hb_000152_110 Hb_000181_340 Hb_000181_340 Hb_000948_150--Hb_000181_340 Hb_000094_070 Hb_000094_070 Hb_000948_150--Hb_000094_070 Hb_001912_110 Hb_001912_110 Hb_000948_150--Hb_001912_110 Hb_004108_160 Hb_004108_160 Hb_000948_150--Hb_004108_160 Hb_032202_040 Hb_032202_040 Hb_000948_150--Hb_032202_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74287 8.49574 15.0068 10.4201 8.34596 3.51567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.68349 4.35491 32.4523 6.73223 10.4201

CAGE analysis