Hb_003680_190

Information

Type -
Description -
Location Contig3680: 200612-201044
Sequence    

Annotation

kegg
ID pop:POPTR_0006s11880g
description hypothetical protein
nr
ID XP_006381333.1
description hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MTM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s11880g PE=4 SV=1
Gene Ontology
ID GO:0030246
description f-box protein pp2-a15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37846: 200271-215578
cDNA
(Sanger)
(ID:Location)		 005_C20.ab1: 200833-215578 , 048_P16.ab1: 200919-215578

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_190 0.0 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
2 Hb_000690_050 0.1305620375 - - -
3 Hb_000629_120 0.1436106641 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
4 Hb_000363_160 0.1471058143 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
5 Hb_000359_010 0.1535141336 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
6 Hb_000898_050 0.1619866788 - - -
7 Hb_000297_040 0.1629634863 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
8 Hb_100804_010 0.1630489478 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
9 Hb_000856_260 0.1630902981 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
10 Hb_011377_050 0.1634219187 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
11 Hb_000161_060 0.1665936904 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
12 Hb_000130_050 0.1671197051 - - 14-3-3 protein, putative [Ricinus communis]
13 Hb_001073_050 0.174993722 - - -
14 Hb_000162_260 0.1759876585 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
15 Hb_000019_070 0.1762726289 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
16 Hb_005625_020 0.1776257207 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
17 Hb_037887_010 0.177851561 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
18 Hb_000792_090 0.1790695758 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
19 Hb_010174_020 0.1794962945 - - protein binding protein, putative [Ricinus communis]
20 Hb_001114_130 0.1796505604 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003680_190 Hb_003680_190 Hb_000690_050 Hb_000690_050 Hb_003680_190--Hb_000690_050 Hb_000629_120 Hb_000629_120 Hb_003680_190--Hb_000629_120 Hb_000363_160 Hb_000363_160 Hb_003680_190--Hb_000363_160 Hb_000359_010 Hb_000359_010 Hb_003680_190--Hb_000359_010 Hb_000898_050 Hb_000898_050 Hb_003680_190--Hb_000898_050 Hb_000297_040 Hb_000297_040 Hb_003680_190--Hb_000297_040 Hb_000690_050--Hb_000363_160 Hb_000690_050--Hb_000297_040 Hb_000856_260 Hb_000856_260 Hb_000690_050--Hb_000856_260 Hb_000224_120 Hb_000224_120 Hb_000690_050--Hb_000224_120 Hb_000690_050--Hb_000629_120 Hb_000161_060 Hb_000161_060 Hb_000629_120--Hb_000161_060 Hb_000138_110 Hb_000138_110 Hb_000629_120--Hb_000138_110 Hb_000125_100 Hb_000125_100 Hb_000629_120--Hb_000125_100 Hb_092337_010 Hb_092337_010 Hb_000629_120--Hb_092337_010 Hb_000567_120 Hb_000567_120 Hb_000629_120--Hb_000567_120 Hb_001205_150 Hb_001205_150 Hb_000629_120--Hb_001205_150 Hb_003943_040 Hb_003943_040 Hb_000363_160--Hb_003943_040 Hb_000363_160--Hb_000359_010 Hb_005625_020 Hb_005625_020 Hb_000363_160--Hb_005625_020 Hb_002687_110 Hb_002687_110 Hb_000363_160--Hb_002687_110 Hb_000029_020 Hb_000029_020 Hb_000363_160--Hb_000029_020 Hb_000363_160--Hb_000898_050 Hb_000080_190 Hb_000080_190 Hb_000359_010--Hb_000080_190 Hb_000359_010--Hb_005625_020 Hb_000359_010--Hb_002687_110 Hb_000260_570 Hb_000260_570 Hb_000359_010--Hb_000260_570 Hb_004738_040 Hb_004738_040 Hb_000359_010--Hb_004738_040 Hb_003092_030 Hb_003092_030 Hb_000898_050--Hb_003092_030 Hb_037887_010 Hb_037887_010 Hb_000898_050--Hb_037887_010 Hb_001114_130 Hb_001114_130 Hb_000898_050--Hb_001114_130 Hb_000898_050--Hb_000856_260 Hb_006198_080 Hb_006198_080 Hb_000898_050--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_000898_050--Hb_006429_010 Hb_004659_060 Hb_004659_060 Hb_000297_040--Hb_004659_060 Hb_114310_080 Hb_114310_080 Hb_000297_040--Hb_114310_080 Hb_000297_040--Hb_000224_120 Hb_001008_090 Hb_001008_090 Hb_000297_040--Hb_001008_090 Hb_000019_070 Hb_000019_070 Hb_000297_040--Hb_000019_070 Hb_011377_050 Hb_011377_050 Hb_000297_040--Hb_011377_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.202 6.52288 5.5816 37.777 20.4268 33.3861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.125 34.2392 78.3387 15.8777 6.20475

CAGE analysis