Hb_000363_160

Information

Type -
Description -
Location Contig363: 116160-118874
Sequence    

Annotation

kegg
ID rcu:RCOM_0046640
description Heterogeneous nuclear ribonucleoprotein 27C, putative
nr
ID XP_002529044.1
description Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID B9SSS5
description Heterogeneous nuclear ribonucleoprotein 27C, putative OS=Ricinus communis GN=RCOM_0046640 PE=4 SV=1
Gene Ontology
ID GO:0019013
description rna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37282: 116265-119805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_160 0.0 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
2 Hb_003943_040 0.0995239123 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000359_010 0.1007285807 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
4 Hb_005625_020 0.1041379752 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
5 Hb_002687_110 0.1097076576 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
6 Hb_000029_020 0.1150312053 - - Vesicle-associated membrane protein, putative [Ricinus communis]
7 Hb_000898_050 0.1160599367 - - -
8 Hb_004738_040 0.1215442298 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
9 Hb_000080_190 0.1240389701 - - -
10 Hb_001357_080 0.1247250014 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
11 Hb_001158_140 0.1249519762 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
12 Hb_001114_130 0.126483862 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
13 Hb_001073_050 0.1273665346 - - -
14 Hb_029866_070 0.1274629092 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
15 Hb_032215_050 0.1282465718 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
16 Hb_183086_060 0.1291448051 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
17 Hb_000629_120 0.129583801 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
18 Hb_023292_010 0.1298829898 - - Cucumisin precursor, putative [Ricinus communis]
19 Hb_003551_050 0.1301281206 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
20 Hb_010174_020 0.1312090751 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000363_160 Hb_000363_160 Hb_003943_040 Hb_003943_040 Hb_000363_160--Hb_003943_040 Hb_000359_010 Hb_000359_010 Hb_000363_160--Hb_000359_010 Hb_005625_020 Hb_005625_020 Hb_000363_160--Hb_005625_020 Hb_002687_110 Hb_002687_110 Hb_000363_160--Hb_002687_110 Hb_000029_020 Hb_000029_020 Hb_000363_160--Hb_000029_020 Hb_000898_050 Hb_000898_050 Hb_000363_160--Hb_000898_050 Hb_003943_040--Hb_002687_110 Hb_004738_040 Hb_004738_040 Hb_003943_040--Hb_004738_040 Hb_001277_330 Hb_001277_330 Hb_003943_040--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_003943_040--Hb_000409_020 Hb_011316_040 Hb_011316_040 Hb_003943_040--Hb_011316_040 Hb_004724_420 Hb_004724_420 Hb_003943_040--Hb_004724_420 Hb_000080_190 Hb_000080_190 Hb_000359_010--Hb_000080_190 Hb_000359_010--Hb_005625_020 Hb_000359_010--Hb_002687_110 Hb_000260_570 Hb_000260_570 Hb_000359_010--Hb_000260_570 Hb_000359_010--Hb_004738_040 Hb_005625_020--Hb_000080_190 Hb_005625_020--Hb_002687_110 Hb_002769_050 Hb_002769_050 Hb_005625_020--Hb_002769_050 Hb_005625_020--Hb_004738_040 Hb_000898_040 Hb_000898_040 Hb_005625_020--Hb_000898_040 Hb_154648_010 Hb_154648_010 Hb_005625_020--Hb_154648_010 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_002687_110--Hb_004738_040 Hb_002687_110--Hb_000080_190 Hb_002687_110--Hb_001277_330 Hb_002687_110--Hb_000409_020 Hb_001811_020 Hb_001811_020 Hb_000029_020--Hb_001811_020 Hb_183086_060 Hb_183086_060 Hb_000029_020--Hb_183086_060 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_000029_020--Hb_002687_110 Hb_000115_330 Hb_000115_330 Hb_000029_020--Hb_000115_330 Hb_004109_190 Hb_004109_190 Hb_000029_020--Hb_004109_190 Hb_003092_030 Hb_003092_030 Hb_000898_050--Hb_003092_030 Hb_037887_010 Hb_037887_010 Hb_000898_050--Hb_037887_010 Hb_001114_130 Hb_001114_130 Hb_000898_050--Hb_001114_130 Hb_000856_260 Hb_000856_260 Hb_000898_050--Hb_000856_260 Hb_006198_080 Hb_006198_080 Hb_000898_050--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_000898_050--Hb_006429_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4647 5.20127 3.56318 30.7479 26.4429 38.6955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.075 36.3215 79.9305 13.968 16.3647

CAGE analysis