Hb_000297_040

Information

Type -
Description -
Location Contig297: 49239-55062
Sequence    

Annotation

kegg
ID rcu:RCOM_1046330
description pre-mRNA cleavage factor im, 25kD subunit, putative
nr
ID XP_002514092.1
description pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
swissprot
ID Q94AF0
description Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana GN=CFIS1 PE=1 SV=1
trembl
ID B9RK48
description Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_1046330 PE=4 SV=1
Gene Ontology
ID GO:0005849
description cleavage and polyadenylation specificity factor subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31089: 51165-52912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_040 0.0 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
2 Hb_004659_060 0.1114400283 - - RAS-related GTP-binding family protein [Populus trichocarpa]
3 Hb_114310_080 0.1263065021 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000224_120 0.12797262 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
5 Hb_001008_090 0.1279740218 - - cytochrome C oxidase, putative [Ricinus communis]
6 Hb_000019_070 0.1312211412 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
7 Hb_011377_050 0.13405497 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
8 Hb_000856_260 0.136664329 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
9 Hb_001481_140 0.1412334969 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
10 Hb_003207_170 0.1423245954 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
11 Hb_006472_050 0.1425303735 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
12 Hb_011457_090 0.143292789 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
13 Hb_000392_380 0.1438058225 - - ubiquitin-conjugating enzyme [Medicago truncatula]
14 Hb_000985_060 0.1479352592 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
15 Hb_001638_240 0.1483663013 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
16 Hb_000417_260 0.1526298323 - - protein with unknown function [Ricinus communis]
17 Hb_005278_040 0.1533595609 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
18 Hb_004374_140 0.1535751173 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
19 Hb_003117_010 0.1539272713 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
20 Hb_010449_040 0.1539342808 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000297_040 Hb_000297_040 Hb_004659_060 Hb_004659_060 Hb_000297_040--Hb_004659_060 Hb_114310_080 Hb_114310_080 Hb_000297_040--Hb_114310_080 Hb_000224_120 Hb_000224_120 Hb_000297_040--Hb_000224_120 Hb_001008_090 Hb_001008_090 Hb_000297_040--Hb_001008_090 Hb_000019_070 Hb_000019_070 Hb_000297_040--Hb_000019_070 Hb_011377_050 Hb_011377_050 Hb_000297_040--Hb_011377_050 Hb_004659_060--Hb_001008_090 Hb_000417_260 Hb_000417_260 Hb_004659_060--Hb_000417_260 Hb_000122_020 Hb_000122_020 Hb_004659_060--Hb_000122_020 Hb_004659_060--Hb_114310_080 Hb_004449_200 Hb_004449_200 Hb_004659_060--Hb_004449_200 Hb_012490_050 Hb_012490_050 Hb_004659_060--Hb_012490_050 Hb_000985_060 Hb_000985_060 Hb_114310_080--Hb_000985_060 Hb_028515_010 Hb_028515_010 Hb_114310_080--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_114310_080--Hb_029388_030 Hb_000483_390 Hb_000483_390 Hb_114310_080--Hb_000483_390 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_011457_090 Hb_011457_090 Hb_000224_120--Hb_011457_090 Hb_004336_050 Hb_004336_050 Hb_000224_120--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000224_120--Hb_000975_110 Hb_004374_140 Hb_004374_140 Hb_000224_120--Hb_004374_140 Hb_001307_090 Hb_001307_090 Hb_000224_120--Hb_001307_090 Hb_000963_180 Hb_000963_180 Hb_000224_120--Hb_000963_180 Hb_005278_040 Hb_005278_040 Hb_001008_090--Hb_005278_040 Hb_001008_090--Hb_000417_260 Hb_006569_100 Hb_006569_100 Hb_001008_090--Hb_006569_100 Hb_000300_220 Hb_000300_220 Hb_001008_090--Hb_000300_220 Hb_183961_010 Hb_183961_010 Hb_001008_090--Hb_183961_010 Hb_003207_170 Hb_003207_170 Hb_000019_070--Hb_003207_170 Hb_000019_070--Hb_114310_080 Hb_000019_070--Hb_000483_390 Hb_000019_070--Hb_011377_050 Hb_000392_380 Hb_000392_380 Hb_000019_070--Hb_000392_380 Hb_003671_020 Hb_003671_020 Hb_000019_070--Hb_003671_020 Hb_011377_050--Hb_000483_390 Hb_011377_050--Hb_114310_080 Hb_000140_050 Hb_000140_050 Hb_011377_050--Hb_000140_050 Hb_006472_050 Hb_006472_050 Hb_011377_050--Hb_006472_050 Hb_003540_030 Hb_003540_030 Hb_011377_050--Hb_003540_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36651 1.58663 0.673208 8.81972 1.98933 5.01038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.20193 11.1178 13.0668 3.83854 1.74247

CAGE analysis