Hb_000690_050

Information

Type -
Description -
Location Contig690: 84080-85551
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000690_050 0.0 - - -
2 Hb_003680_190 0.1305620375 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
3 Hb_000363_160 0.144697288 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
4 Hb_000297_040 0.1597384122 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
5 Hb_000856_260 0.1646942669 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
6 Hb_000224_120 0.1690035363 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
7 Hb_000629_120 0.1696608159 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
8 Hb_001357_080 0.1717688241 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
9 Hb_010174_020 0.1822302676 - - protein binding protein, putative [Ricinus communis]
10 Hb_000019_070 0.1835351037 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
11 Hb_000359_010 0.1838919239 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
12 Hb_000898_050 0.1839048951 - - -
13 Hb_029866_070 0.1841266336 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
14 Hb_010449_040 0.185896289 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
15 Hb_001053_150 0.1869205527 - - -
16 Hb_011377_050 0.1873233073 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
17 Hb_000161_060 0.1884501169 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
18 Hb_000001_050 0.1886747952 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
19 Hb_029866_040 0.1889507374 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
20 Hb_000963_180 0.1892374465 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000690_050 Hb_000690_050 Hb_003680_190 Hb_003680_190 Hb_000690_050--Hb_003680_190 Hb_000363_160 Hb_000363_160 Hb_000690_050--Hb_000363_160 Hb_000297_040 Hb_000297_040 Hb_000690_050--Hb_000297_040 Hb_000856_260 Hb_000856_260 Hb_000690_050--Hb_000856_260 Hb_000224_120 Hb_000224_120 Hb_000690_050--Hb_000224_120 Hb_000629_120 Hb_000629_120 Hb_000690_050--Hb_000629_120 Hb_003680_190--Hb_000629_120 Hb_003680_190--Hb_000363_160 Hb_000359_010 Hb_000359_010 Hb_003680_190--Hb_000359_010 Hb_000898_050 Hb_000898_050 Hb_003680_190--Hb_000898_050 Hb_003680_190--Hb_000297_040 Hb_003943_040 Hb_003943_040 Hb_000363_160--Hb_003943_040 Hb_000363_160--Hb_000359_010 Hb_005625_020 Hb_005625_020 Hb_000363_160--Hb_005625_020 Hb_002687_110 Hb_002687_110 Hb_000363_160--Hb_002687_110 Hb_000029_020 Hb_000029_020 Hb_000363_160--Hb_000029_020 Hb_000363_160--Hb_000898_050 Hb_004659_060 Hb_004659_060 Hb_000297_040--Hb_004659_060 Hb_114310_080 Hb_114310_080 Hb_000297_040--Hb_114310_080 Hb_000297_040--Hb_000224_120 Hb_001008_090 Hb_001008_090 Hb_000297_040--Hb_001008_090 Hb_000019_070 Hb_000019_070 Hb_000297_040--Hb_000019_070 Hb_011377_050 Hb_011377_050 Hb_000297_040--Hb_011377_050 Hb_000856_260--Hb_000898_050 Hb_000856_260--Hb_000224_120 Hb_006429_010 Hb_006429_010 Hb_000856_260--Hb_006429_010 Hb_180301_010 Hb_180301_010 Hb_000856_260--Hb_180301_010 Hb_000635_150 Hb_000635_150 Hb_000856_260--Hb_000635_150 Hb_074979_020 Hb_074979_020 Hb_000856_260--Hb_074979_020 Hb_011457_090 Hb_011457_090 Hb_000224_120--Hb_011457_090 Hb_004336_050 Hb_004336_050 Hb_000224_120--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000224_120--Hb_000975_110 Hb_004374_140 Hb_004374_140 Hb_000224_120--Hb_004374_140 Hb_001307_090 Hb_001307_090 Hb_000224_120--Hb_001307_090 Hb_000963_180 Hb_000963_180 Hb_000224_120--Hb_000963_180 Hb_000161_060 Hb_000161_060 Hb_000629_120--Hb_000161_060 Hb_000138_110 Hb_000138_110 Hb_000629_120--Hb_000138_110 Hb_000125_100 Hb_000125_100 Hb_000629_120--Hb_000125_100 Hb_092337_010 Hb_092337_010 Hb_000629_120--Hb_092337_010 Hb_000567_120 Hb_000567_120 Hb_000629_120--Hb_000567_120 Hb_001205_150 Hb_001205_150 Hb_000629_120--Hb_001205_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.550107 0.204263 0 1.39395 0.622402 1.28712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.738616 1.74111 2.68728 0.425145 0.326837

CAGE analysis