Hb_078897_010

Information

Type -
Description -
Location Contig78897: 1776-2966
Sequence    

Annotation

kegg
ID pop:POPTR_0012s044902
description hypothetical protein
nr
ID XP_006376718.1
description hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
swissprot
ID Q9FR44
description Phosphoethanolamine N-methyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=1
trembl
ID U5FX68
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s044902g PE=4 SV=1
Gene Ontology
ID GO:0005829
description phosphoethanolamine n-methyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078897_010 0.0 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
2 Hb_000544_160 0.1684494363 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
3 Hb_001366_120 0.198649171 - - unknown [Zea mays]
4 Hb_010712_070 0.2039603931 - - Galactoside 2-alpha-L-fucosyltransferase [Aegilops tauschii]
5 Hb_001711_050 0.2445131061 - - -
6 Hb_000312_050 0.2447935427 - - transcription factor, putative [Ricinus communis]
7 Hb_002722_010 0.2532776779 - - Disease resistance response protein, putative [Ricinus communis]
8 Hb_000256_070 0.2566818386 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
9 Hb_004899_060 0.2678341592 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
10 Hb_000397_120 0.2812548745 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
11 Hb_000062_100 0.2816710651 - - -
12 Hb_005723_040 0.2830689849 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
13 Hb_002863_120 0.2880506094 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
14 Hb_006911_050 0.2883538087 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
15 Hb_102632_010 0.2892191856 - - PREDICTED: CST complex subunit STN1 [Jatropha curcas]
16 Hb_006495_080 0.2929418169 - - hypothetical protein PRUPE_ppb025438mg, partial [Prunus persica]
17 Hb_008778_010 0.2963446697 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_029921_020 0.2980836378 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
19 Hb_089206_010 0.3004230303 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_006921_040 0.3013329838 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]

Gene co-expression network

sample Hb_078897_010 Hb_078897_010 Hb_000544_160 Hb_000544_160 Hb_078897_010--Hb_000544_160 Hb_001366_120 Hb_001366_120 Hb_078897_010--Hb_001366_120 Hb_010712_070 Hb_010712_070 Hb_078897_010--Hb_010712_070 Hb_001711_050 Hb_001711_050 Hb_078897_010--Hb_001711_050 Hb_000312_050 Hb_000312_050 Hb_078897_010--Hb_000312_050 Hb_002722_010 Hb_002722_010 Hb_078897_010--Hb_002722_010 Hb_000544_160--Hb_010712_070 Hb_000544_160--Hb_002722_010 Hb_006921_040 Hb_006921_040 Hb_000544_160--Hb_006921_040 Hb_000107_470 Hb_000107_470 Hb_000544_160--Hb_000107_470 Hb_000544_160--Hb_001366_120 Hb_004899_060 Hb_004899_060 Hb_001366_120--Hb_004899_060 Hb_005976_050 Hb_005976_050 Hb_001366_120--Hb_005976_050 Hb_000069_170 Hb_000069_170 Hb_001366_120--Hb_000069_170 Hb_001606_080 Hb_001606_080 Hb_001366_120--Hb_001606_080 Hb_031862_130 Hb_031862_130 Hb_001366_120--Hb_031862_130 Hb_010712_070--Hb_002722_010 Hb_102632_010 Hb_102632_010 Hb_010712_070--Hb_102632_010 Hb_000030_160 Hb_000030_160 Hb_010712_070--Hb_000030_160 Hb_007765_070 Hb_007765_070 Hb_010712_070--Hb_007765_070 Hb_160715_010 Hb_160715_010 Hb_001711_050--Hb_160715_010 Hb_002863_120 Hb_002863_120 Hb_001711_050--Hb_002863_120 Hb_000928_050 Hb_000928_050 Hb_001711_050--Hb_000928_050 Hb_000256_070 Hb_000256_070 Hb_001711_050--Hb_000256_070 Hb_138462_010 Hb_138462_010 Hb_001711_050--Hb_138462_010 Hb_010534_050 Hb_010534_050 Hb_001711_050--Hb_010534_050 Hb_000454_040 Hb_000454_040 Hb_000312_050--Hb_000454_040 Hb_000186_170 Hb_000186_170 Hb_000312_050--Hb_000186_170 Hb_006472_080 Hb_006472_080 Hb_000312_050--Hb_006472_080 Hb_000312_050--Hb_001711_050 Hb_001053_060 Hb_001053_060 Hb_000312_050--Hb_001053_060 Hb_000080_160 Hb_000080_160 Hb_002722_010--Hb_000080_160 Hb_002722_010--Hb_000030_160 Hb_021650_020 Hb_021650_020 Hb_002722_010--Hb_021650_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54749 0.274251 2.12409 1.34869 0.0609514 1.3246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.45515 0.691372 0.453895

CAGE analysis