Hb_021650_020

Information

Type -
Description -
Location Contig21650: 6204-8764
Sequence    

Annotation

kegg
ID rcu:RCOM_0852180
description nitrate transporter, putative
nr
ID XP_002517390.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9LV10
description Protein NRT1/ PTR FAMILY 2.11 OS=Arabidopsis thaliana GN=NPF2.11 PE=1 SV=1
trembl
ID B9RUE5
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_0852180 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021650_020 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_009288_030 0.2324099907 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
3 Hb_000012_320 0.2439570232 - - PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
4 Hb_000244_150 0.2470776339 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
5 Hb_001476_130 0.2492936208 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
6 Hb_000080_160 0.2520821204 - - Peroxin 13 [Theobroma cacao]
7 Hb_006472_080 0.254852351 - - -
8 Hb_028872_160 0.2619098023 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
9 Hb_004297_090 0.2625080904 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
10 Hb_113119_010 0.2632990415 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001677_100 0.2652621078 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
12 Hb_001240_050 0.2665426447 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
13 Hb_002093_050 0.2666738608 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
14 Hb_000406_090 0.2693114797 - - unknown [Populus trichocarpa]
15 Hb_001780_030 0.2696437956 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
16 Hb_000088_240 0.2707341944 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_000363_410 0.2709220037 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
18 Hb_000365_200 0.2727353359 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
19 Hb_001085_150 0.2738284308 - - Purple acid phosphatase 15 [Theobroma cacao]
20 Hb_011485_030 0.2751915652 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]

Gene co-expression network

sample Hb_021650_020 Hb_021650_020 Hb_009288_030 Hb_009288_030 Hb_021650_020--Hb_009288_030 Hb_000012_320 Hb_000012_320 Hb_021650_020--Hb_000012_320 Hb_000244_150 Hb_000244_150 Hb_021650_020--Hb_000244_150 Hb_001476_130 Hb_001476_130 Hb_021650_020--Hb_001476_130 Hb_000080_160 Hb_000080_160 Hb_021650_020--Hb_000080_160 Hb_006472_080 Hb_006472_080 Hb_021650_020--Hb_006472_080 Hb_004297_090 Hb_004297_090 Hb_009288_030--Hb_004297_090 Hb_001677_100 Hb_001677_100 Hb_009288_030--Hb_001677_100 Hb_000678_010 Hb_000678_010 Hb_009288_030--Hb_000678_010 Hb_000661_220 Hb_000661_220 Hb_009288_030--Hb_000661_220 Hb_005903_020 Hb_005903_020 Hb_009288_030--Hb_005903_020 Hb_000000_330 Hb_000000_330 Hb_009288_030--Hb_000000_330 Hb_001240_050 Hb_001240_050 Hb_000012_320--Hb_001240_050 Hb_002942_140 Hb_002942_140 Hb_000012_320--Hb_002942_140 Hb_004545_080 Hb_004545_080 Hb_000012_320--Hb_004545_080 Hb_001117_080 Hb_001117_080 Hb_000012_320--Hb_001117_080 Hb_002432_050 Hb_002432_050 Hb_000012_320--Hb_002432_050 Hb_001048_100 Hb_001048_100 Hb_000012_320--Hb_001048_100 Hb_001780_030 Hb_001780_030 Hb_000244_150--Hb_001780_030 Hb_002662_040 Hb_002662_040 Hb_000244_150--Hb_002662_040 Hb_001322_160 Hb_001322_160 Hb_000244_150--Hb_001322_160 Hb_013726_010 Hb_013726_010 Hb_000244_150--Hb_013726_010 Hb_000028_490 Hb_000028_490 Hb_000244_150--Hb_000028_490 Hb_004531_080 Hb_004531_080 Hb_000244_150--Hb_004531_080 Hb_002871_130 Hb_002871_130 Hb_001476_130--Hb_002871_130 Hb_000120_300 Hb_000120_300 Hb_001476_130--Hb_000120_300 Hb_000483_080 Hb_000483_080 Hb_001476_130--Hb_000483_080 Hb_002918_120 Hb_002918_120 Hb_001476_130--Hb_002918_120 Hb_003674_020 Hb_003674_020 Hb_001476_130--Hb_003674_020 Hb_000077_110 Hb_000077_110 Hb_001476_130--Hb_000077_110 Hb_002722_010 Hb_002722_010 Hb_000080_160--Hb_002722_010 Hb_000080_160--Hb_006472_080 Hb_000618_090 Hb_000618_090 Hb_000080_160--Hb_000618_090 Hb_003994_130 Hb_003994_130 Hb_000080_160--Hb_003994_130 Hb_001021_070 Hb_001021_070 Hb_000080_160--Hb_001021_070 Hb_105328_010 Hb_105328_010 Hb_006472_080--Hb_105328_010 Hb_001085_150 Hb_001085_150 Hb_006472_080--Hb_001085_150 Hb_000820_060 Hb_000820_060 Hb_006472_080--Hb_000820_060 Hb_006472_070 Hb_006472_070 Hb_006472_080--Hb_006472_070 Hb_000820_050 Hb_000820_050 Hb_006472_080--Hb_000820_050 Hb_000320_260 Hb_000320_260 Hb_006472_080--Hb_000320_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0412468 0.00915215 0.162133 0.0650011 0.0110957 0.0107863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0374863 0.142105 0.041766

CAGE analysis