Hb_006472_070

Information

Type -
Description -
Location Contig6472: 77860-79945
Sequence    

Annotation

kegg
ID egr:104445137
description uncharacterized LOC104445137
nr
ID XP_010057259.1
description PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059B1K9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02626 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52385: 75243-80707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006472_070 0.0 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
2 Hb_004193_010 0.2091906084 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
3 Hb_000010_300 0.2105607239 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
4 Hb_001016_140 0.213809436 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
5 Hb_006472_080 0.219661882 - - -
6 Hb_001085_150 0.2251133495 - - Purple acid phosphatase 15 [Theobroma cacao]
7 Hb_000320_260 0.2258903864 - - unnamed protein product [Vitis vinifera]
8 Hb_143813_020 0.239524027 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
9 Hb_006120_150 0.2462676831 - - invertase [Hevea brasiliensis]
10 Hb_000123_240 0.247400261 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
11 Hb_012092_100 0.2480603774 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009571_010 0.2481784984 - - early-responsive to dehydration family protein [Populus trichocarpa]
13 Hb_001247_020 0.2528206314 - - galactinol synthase family protein [Populus trichocarpa]
14 Hb_083940_010 0.2535895426 - - Zeamatin precursor, putative [Ricinus communis]
15 Hb_069591_010 0.2541591366 - - -
16 Hb_004452_090 0.2597157097 - - hypothetical protein JCGZ_12231 [Jatropha curcas]
17 Hb_012754_020 0.264664703 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
18 Hb_000985_070 0.2649371336 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
19 Hb_006545_020 0.2692148796 - - multicopper oxidase, putative [Ricinus communis]
20 Hb_000883_170 0.2738361927 - - senescence-associated family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_006472_070 Hb_006472_070 Hb_004193_010 Hb_004193_010 Hb_006472_070--Hb_004193_010 Hb_000010_300 Hb_000010_300 Hb_006472_070--Hb_000010_300 Hb_001016_140 Hb_001016_140 Hb_006472_070--Hb_001016_140 Hb_006472_080 Hb_006472_080 Hb_006472_070--Hb_006472_080 Hb_001085_150 Hb_001085_150 Hb_006472_070--Hb_001085_150 Hb_000320_260 Hb_000320_260 Hb_006472_070--Hb_000320_260 Hb_143813_020 Hb_143813_020 Hb_004193_010--Hb_143813_020 Hb_006120_150 Hb_006120_150 Hb_004193_010--Hb_006120_150 Hb_069591_010 Hb_069591_010 Hb_004193_010--Hb_069591_010 Hb_002478_040 Hb_002478_040 Hb_004193_010--Hb_002478_040 Hb_006545_020 Hb_006545_020 Hb_004193_010--Hb_006545_020 Hb_000979_060 Hb_000979_060 Hb_004193_010--Hb_000979_060 Hb_000010_300--Hb_000320_260 Hb_009571_010 Hb_009571_010 Hb_000010_300--Hb_009571_010 Hb_004452_090 Hb_004452_090 Hb_000010_300--Hb_004452_090 Hb_000086_670 Hb_000086_670 Hb_000010_300--Hb_000086_670 Hb_006289_020 Hb_006289_020 Hb_000010_300--Hb_006289_020 Hb_184008_010 Hb_184008_010 Hb_001016_140--Hb_184008_010 Hb_003751_100 Hb_003751_100 Hb_001016_140--Hb_003751_100 Hb_001016_140--Hb_006545_020 Hb_000272_110 Hb_000272_110 Hb_001016_140--Hb_000272_110 Hb_052434_010 Hb_052434_010 Hb_001016_140--Hb_052434_010 Hb_105328_010 Hb_105328_010 Hb_006472_080--Hb_105328_010 Hb_006472_080--Hb_001085_150 Hb_000820_060 Hb_000820_060 Hb_006472_080--Hb_000820_060 Hb_000820_050 Hb_000820_050 Hb_006472_080--Hb_000820_050 Hb_006472_080--Hb_000320_260 Hb_001085_150--Hb_105328_010 Hb_000804_020 Hb_000804_020 Hb_001085_150--Hb_000804_020 Hb_083940_010 Hb_083940_010 Hb_001085_150--Hb_083940_010 Hb_003025_030 Hb_003025_030 Hb_001085_150--Hb_003025_030 Hb_003659_010 Hb_003659_010 Hb_001085_150--Hb_003659_010 Hb_005545_020 Hb_005545_020 Hb_001085_150--Hb_005545_020 Hb_009541_010 Hb_009541_010 Hb_000320_260--Hb_009541_010 Hb_002662_040 Hb_002662_040 Hb_000320_260--Hb_002662_040 Hb_000526_010 Hb_000526_010 Hb_000320_260--Hb_000526_010 Hb_004163_030 Hb_004163_030 Hb_000320_260--Hb_004163_030 Hb_000320_260--Hb_105328_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.614829 1.46157 3.57727 1.02259 0.0892441 0.0453822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0453379 0.0713462 2.19831 1.58251 0.414597

CAGE analysis