Hb_000320_260

Information

Type -
Description -
Location Contig320: 192990-200655
Sequence    

Annotation

kegg
ID eus:EUTSA_v10006713mg
description hypothetical protein
nr
ID CBI23232.3
description unnamed protein product [Vitis vinifera]
swissprot
ID O65399
description Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3
trembl
ID A0A068U886
description Coffea canephora DH200=94 genomic scaffold, scaffold_12 OS=Coffea canephora GN=GSCOC_T00017795001 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33798: 193165-194885 , PASA_asmbl_33799: 195139-195586 , PASA_asmbl_33800: 197054-199946 , PASA_asmbl_33801: 197891-198082 , PASA_asmbl_33802: 199966-200338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_260 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000010_300 0.1814961092 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
3 Hb_009541_010 0.1882913391 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
4 Hb_002662_040 0.1921742329 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
5 Hb_000526_010 0.2002184294 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
6 Hb_004163_030 0.2050205985 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
7 Hb_105328_010 0.2199315081 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
8 Hb_011828_040 0.2239124006 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
9 Hb_127416_010 0.2243137483 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
10 Hb_006472_070 0.2258903864 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
11 Hb_008747_010 0.2261045067 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
12 Hb_027043_010 0.228790553 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
13 Hb_006634_100 0.2318828852 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000244_150 0.2325606189 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
15 Hb_006472_080 0.2326231581 - - -
16 Hb_007426_220 0.2332882715 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
17 Hb_052135_020 0.2340475295 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
18 Hb_000735_080 0.2353263196 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
19 Hb_000236_480 0.2375383634 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
20 Hb_083940_010 0.2397476545 - - Zeamatin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000320_260 Hb_000320_260 Hb_000010_300 Hb_000010_300 Hb_000320_260--Hb_000010_300 Hb_009541_010 Hb_009541_010 Hb_000320_260--Hb_009541_010 Hb_002662_040 Hb_002662_040 Hb_000320_260--Hb_002662_040 Hb_000526_010 Hb_000526_010 Hb_000320_260--Hb_000526_010 Hb_004163_030 Hb_004163_030 Hb_000320_260--Hb_004163_030 Hb_105328_010 Hb_105328_010 Hb_000320_260--Hb_105328_010 Hb_009571_010 Hb_009571_010 Hb_000010_300--Hb_009571_010 Hb_004452_090 Hb_004452_090 Hb_000010_300--Hb_004452_090 Hb_000086_670 Hb_000086_670 Hb_000010_300--Hb_000086_670 Hb_006472_070 Hb_006472_070 Hb_000010_300--Hb_006472_070 Hb_006289_020 Hb_006289_020 Hb_000010_300--Hb_006289_020 Hb_000414_140 Hb_000414_140 Hb_009541_010--Hb_000414_140 Hb_002928_020 Hb_002928_020 Hb_009541_010--Hb_002928_020 Hb_027043_010 Hb_027043_010 Hb_009541_010--Hb_027043_010 Hb_083493_010 Hb_083493_010 Hb_009541_010--Hb_083493_010 Hb_000466_070 Hb_000466_070 Hb_009541_010--Hb_000466_070 Hb_002662_040--Hb_000526_010 Hb_002662_040--Hb_004163_030 Hb_006634_100 Hb_006634_100 Hb_002662_040--Hb_006634_100 Hb_000244_150 Hb_000244_150 Hb_002662_040--Hb_000244_150 Hb_000935_080 Hb_000935_080 Hb_002662_040--Hb_000935_080 Hb_011828_040 Hb_011828_040 Hb_002662_040--Hb_011828_040 Hb_000526_010--Hb_004163_030 Hb_000526_010--Hb_011828_040 Hb_007426_220 Hb_007426_220 Hb_000526_010--Hb_007426_220 Hb_004155_020 Hb_004155_020 Hb_000526_010--Hb_004155_020 Hb_002783_220 Hb_002783_220 Hb_000526_010--Hb_002783_220 Hb_001141_050 Hb_001141_050 Hb_004163_030--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_004163_030--Hb_000230_190 Hb_004163_030--Hb_006634_100 Hb_004163_030--Hb_004155_020 Hb_000032_450 Hb_000032_450 Hb_105328_010--Hb_000032_450 Hb_001085_150 Hb_001085_150 Hb_105328_010--Hb_001085_150 Hb_083940_010 Hb_083940_010 Hb_105328_010--Hb_083940_010 Hb_000820_050 Hb_000820_050 Hb_105328_010--Hb_000820_050 Hb_000703_280 Hb_000703_280 Hb_105328_010--Hb_000703_280 Hb_006472_080 Hb_006472_080 Hb_105328_010--Hb_006472_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10577 6.34222 19.0291 13.3121 0.124425 3.49992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.644869 0.407972 10.8908 6.73611 3.80867

CAGE analysis