Hb_009571_010

Information

Type -
Description -
Location Contig9571: 7453-16026
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15430g
description POPTRDRAFT_807630; early-responsive to dehydration family protein
nr
ID XP_002321139.1
description early-responsive to dehydration family protein [Populus trichocarpa]
swissprot
ID Q9LVE4
description CSC1-like protein At3g21620 OS=Arabidopsis thaliana GN=At3g21620 PE=2 SV=1
trembl
ID B9IAI0
description Early-responsive to dehydration family protein OS=Populus trichocarpa GN=POPTR_0014s15430g PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein at3g21620

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63568: 11376-13461 , PASA_asmbl_63569: 14050-14554 , PASA_asmbl_63570: 14615-15980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009571_010 0.0 - - early-responsive to dehydration family protein [Populus trichocarpa]
2 Hb_000883_170 0.1609672289 - - senescence-associated family protein [Populus trichocarpa]
3 Hb_083940_010 0.163551828 - - Zeamatin precursor, putative [Ricinus communis]
4 Hb_007919_020 0.1838051569 - - electron transporter, putative [Ricinus communis]
5 Hb_001946_220 0.1864791543 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
6 Hb_000368_030 0.1895094174 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
7 Hb_000010_300 0.1928367462 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
8 Hb_027746_020 0.1969894444 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
9 Hb_071130_050 0.1977835566 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
10 Hb_000120_250 0.198551866 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
11 Hb_001369_470 0.2001496767 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
12 Hb_005333_060 0.2018553944 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
13 Hb_143813_020 0.2042320179 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
14 Hb_005181_160 0.2051501447 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
15 Hb_005903_020 0.2087935049 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
16 Hb_005725_050 0.2102223152 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
17 Hb_001482_050 0.210354954 - - COR413-PM2, putative [Ricinus communis]
18 Hb_001633_090 0.2107057122 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
19 Hb_005144_210 0.2132868157 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007850_030 0.2157666151 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]

Gene co-expression network

sample Hb_009571_010 Hb_009571_010 Hb_000883_170 Hb_000883_170 Hb_009571_010--Hb_000883_170 Hb_083940_010 Hb_083940_010 Hb_009571_010--Hb_083940_010 Hb_007919_020 Hb_007919_020 Hb_009571_010--Hb_007919_020 Hb_001946_220 Hb_001946_220 Hb_009571_010--Hb_001946_220 Hb_000368_030 Hb_000368_030 Hb_009571_010--Hb_000368_030 Hb_000010_300 Hb_000010_300 Hb_009571_010--Hb_000010_300 Hb_005144_210 Hb_005144_210 Hb_000883_170--Hb_005144_210 Hb_001369_470 Hb_001369_470 Hb_000883_170--Hb_001369_470 Hb_000098_030 Hb_000098_030 Hb_000883_170--Hb_000098_030 Hb_000098_150 Hb_000098_150 Hb_000883_170--Hb_000098_150 Hb_001863_160 Hb_001863_160 Hb_000883_170--Hb_001863_160 Hb_003050_260 Hb_003050_260 Hb_000883_170--Hb_003050_260 Hb_001147_050 Hb_001147_050 Hb_083940_010--Hb_001147_050 Hb_000193_260 Hb_000193_260 Hb_083940_010--Hb_000193_260 Hb_000189_170 Hb_000189_170 Hb_083940_010--Hb_000189_170 Hb_002534_130 Hb_002534_130 Hb_083940_010--Hb_002534_130 Hb_005214_170 Hb_005214_170 Hb_083940_010--Hb_005214_170 Hb_001221_330 Hb_001221_330 Hb_083940_010--Hb_001221_330 Hb_007919_020--Hb_001946_220 Hb_000270_180 Hb_000270_180 Hb_007919_020--Hb_000270_180 Hb_007919_020--Hb_000368_030 Hb_001205_080 Hb_001205_080 Hb_007919_020--Hb_001205_080 Hb_000742_010 Hb_000742_010 Hb_007919_020--Hb_000742_010 Hb_000648_050 Hb_000648_050 Hb_007919_020--Hb_000648_050 Hb_000120_720 Hb_000120_720 Hb_001946_220--Hb_000120_720 Hb_001946_220--Hb_000742_010 Hb_002913_010 Hb_002913_010 Hb_001946_220--Hb_002913_010 Hb_000320_300 Hb_000320_300 Hb_001946_220--Hb_000320_300 Hb_001946_220--Hb_001205_080 Hb_000368_030--Hb_000270_180 Hb_005181_160 Hb_005181_160 Hb_000368_030--Hb_005181_160 Hb_000368_030--Hb_001221_330 Hb_000368_030--Hb_001946_220 Hb_002249_070 Hb_002249_070 Hb_000368_030--Hb_002249_070 Hb_000320_260 Hb_000320_260 Hb_000010_300--Hb_000320_260 Hb_004452_090 Hb_004452_090 Hb_000010_300--Hb_004452_090 Hb_000086_670 Hb_000086_670 Hb_000010_300--Hb_000086_670 Hb_006472_070 Hb_006472_070 Hb_000010_300--Hb_006472_070 Hb_006289_020 Hb_006289_020 Hb_000010_300--Hb_006289_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91803 2.04621 8.96692 5.16611 0.852076 0.734373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.23028 1.11801 5.28535 5.10852 0.498074

CAGE analysis