Hb_000098_030

Information

Type -
Description -
Location Contig98: 4932-15028
Sequence    

Annotation

kegg
ID rcu:RCOM_0321050
description calmodulin binding protein, putative
nr
ID KHG00015.1
description MLO-like protein 4 [Gossypium arboreum]
swissprot
ID O23693
description MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4 PE=2 SV=2
trembl
ID A0A0B0MGV1
description MLO-like protein OS=Gossypium arboreum GN=MLO PE=3 SV=1
Gene Ontology
ID GO:0016021
description mlo-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64332: 3974-4147 , PASA_asmbl_64333: 11566-12945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_030 0.0 - - MLO-like protein 4 [Gossypium arboreum]
2 Hb_005725_230 0.1234705739 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
3 Hb_000296_010 0.1291968898 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
4 Hb_003050_260 0.1474952311 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
5 Hb_000883_170 0.1489594557 - - senescence-associated family protein [Populus trichocarpa]
6 Hb_005539_340 0.1574316354 - - PREDICTED: CDT1-like protein a, chloroplastic [Jatropha curcas]
7 Hb_005144_210 0.1688628 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001004_140 0.1704489129 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
9 Hb_030982_030 0.1715940775 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
10 Hb_000229_050 0.1742853282 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
11 Hb_004611_030 0.176492475 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
12 Hb_039021_010 0.1767148948 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
13 Hb_004800_150 0.1767254925 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
14 Hb_004108_210 0.1768481745 - - phenazine biosynthesis protein, putative [Ricinus communis]
15 Hb_002687_060 0.1781834574 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
16 Hb_006468_010 0.1791026187 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
17 Hb_001369_300 0.179519598 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
18 Hb_001123_220 0.1798585359 - - -
19 Hb_008053_060 0.1800500302 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
20 Hb_009659_030 0.1807590433 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000098_030 Hb_000098_030 Hb_005725_230 Hb_005725_230 Hb_000098_030--Hb_005725_230 Hb_000296_010 Hb_000296_010 Hb_000098_030--Hb_000296_010 Hb_003050_260 Hb_003050_260 Hb_000098_030--Hb_003050_260 Hb_000883_170 Hb_000883_170 Hb_000098_030--Hb_000883_170 Hb_005539_340 Hb_005539_340 Hb_000098_030--Hb_005539_340 Hb_005144_210 Hb_005144_210 Hb_000098_030--Hb_005144_210 Hb_000317_160 Hb_000317_160 Hb_005725_230--Hb_000317_160 Hb_005725_230--Hb_000296_010 Hb_027746_020 Hb_027746_020 Hb_005725_230--Hb_027746_020 Hb_004137_100 Hb_004137_100 Hb_005725_230--Hb_004137_100 Hb_002685_150 Hb_002685_150 Hb_005725_230--Hb_002685_150 Hb_004108_210 Hb_004108_210 Hb_000296_010--Hb_004108_210 Hb_000098_150 Hb_000098_150 Hb_000296_010--Hb_000098_150 Hb_002913_010 Hb_002913_010 Hb_000296_010--Hb_002913_010 Hb_000296_010--Hb_005144_210 Hb_000940_050 Hb_000940_050 Hb_000296_010--Hb_000940_050 Hb_010812_070 Hb_010812_070 Hb_003050_260--Hb_010812_070 Hb_039021_010 Hb_039021_010 Hb_003050_260--Hb_039021_010 Hb_003050_260--Hb_005144_210 Hb_001268_340 Hb_001268_340 Hb_003050_260--Hb_001268_340 Hb_002837_050 Hb_002837_050 Hb_003050_260--Hb_002837_050 Hb_005754_040 Hb_005754_040 Hb_003050_260--Hb_005754_040 Hb_000883_170--Hb_005144_210 Hb_001369_470 Hb_001369_470 Hb_000883_170--Hb_001369_470 Hb_000883_170--Hb_000098_150 Hb_001863_160 Hb_001863_160 Hb_000883_170--Hb_001863_160 Hb_000883_170--Hb_003050_260 Hb_000116_030 Hb_000116_030 Hb_005539_340--Hb_000116_030 Hb_003177_020 Hb_003177_020 Hb_005539_340--Hb_003177_020 Hb_000787_150 Hb_000787_150 Hb_005539_340--Hb_000787_150 Hb_005779_010 Hb_005779_010 Hb_005539_340--Hb_005779_010 Hb_002675_110 Hb_002675_110 Hb_005539_340--Hb_002675_110 Hb_000071_170 Hb_000071_170 Hb_005539_340--Hb_000071_170 Hb_004712_190 Hb_004712_190 Hb_005144_210--Hb_004712_190 Hb_005144_210--Hb_004108_210 Hb_000703_160 Hb_000703_160 Hb_005144_210--Hb_000703_160 Hb_005144_210--Hb_001369_470 Hb_014231_020 Hb_014231_020 Hb_005144_210--Hb_014231_020 Hb_005144_210--Hb_000098_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47931 0.998462 2.29631 1.39934 0.613104 0.347438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.513351 0.700005 0.352957 2.21635 0.280646

CAGE analysis