Hb_005725_230

Information

Type transcription factor
Description TF Family: AP2
Location Contig5725: 141894-145428
Sequence    

Annotation

kegg
ID tcc:TCM_034652
description Integrase-type DNA-binding superfamily protein
nr
ID XP_012068166.1
description PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
swissprot
ID Q38914
description AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2
trembl
ID A0A067LBU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15986 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor ant

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49424: 141494-144622 , PASA_asmbl_49425: 141494-144622 , PASA_asmbl_49426: 144882-145391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_230 0.0 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
2 Hb_000317_160 0.1160275042 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
3 Hb_000098_030 0.1234705739 - - MLO-like protein 4 [Gossypium arboreum]
4 Hb_000296_010 0.1555011332 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
5 Hb_027746_020 0.1798344463 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
6 Hb_004137_100 0.1810451693 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
7 Hb_002685_150 0.1820281483 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
8 Hb_007185_040 0.1876618017 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
9 Hb_001004_140 0.1894635017 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
10 Hb_002687_060 0.1898954392 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
11 Hb_000678_010 0.1902870627 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
12 Hb_008053_060 0.192273529 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
13 Hb_000029_090 0.192884862 - - Nicalin precursor, putative [Ricinus communis]
14 Hb_122548_010 0.1938572904 - - acyl-CoA oxidase, putative [Ricinus communis]
15 Hb_003050_260 0.1951585383 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
16 Hb_001369_300 0.1983301366 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
17 Hb_002913_010 0.1990605991 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
18 Hb_172112_020 0.1994364917 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
19 Hb_033772_070 0.1997044439 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
20 Hb_001123_220 0.1999606607 - - -

Gene co-expression network

sample Hb_005725_230 Hb_005725_230 Hb_000317_160 Hb_000317_160 Hb_005725_230--Hb_000317_160 Hb_000098_030 Hb_000098_030 Hb_005725_230--Hb_000098_030 Hb_000296_010 Hb_000296_010 Hb_005725_230--Hb_000296_010 Hb_027746_020 Hb_027746_020 Hb_005725_230--Hb_027746_020 Hb_004137_100 Hb_004137_100 Hb_005725_230--Hb_004137_100 Hb_002685_150 Hb_002685_150 Hb_005725_230--Hb_002685_150 Hb_000317_160--Hb_002685_150 Hb_000023_160 Hb_000023_160 Hb_000317_160--Hb_000023_160 Hb_002217_470 Hb_002217_470 Hb_000317_160--Hb_002217_470 Hb_000317_160--Hb_004137_100 Hb_000317_160--Hb_027746_020 Hb_000098_030--Hb_000296_010 Hb_003050_260 Hb_003050_260 Hb_000098_030--Hb_003050_260 Hb_000883_170 Hb_000883_170 Hb_000098_030--Hb_000883_170 Hb_005539_340 Hb_005539_340 Hb_000098_030--Hb_005539_340 Hb_005144_210 Hb_005144_210 Hb_000098_030--Hb_005144_210 Hb_004108_210 Hb_004108_210 Hb_000296_010--Hb_004108_210 Hb_000098_150 Hb_000098_150 Hb_000296_010--Hb_000098_150 Hb_002913_010 Hb_002913_010 Hb_000296_010--Hb_002913_010 Hb_000296_010--Hb_005144_210 Hb_000940_050 Hb_000940_050 Hb_000296_010--Hb_000940_050 Hb_009193_090 Hb_009193_090 Hb_027746_020--Hb_009193_090 Hb_133004_010 Hb_133004_010 Hb_027746_020--Hb_133004_010 Hb_002676_120 Hb_002676_120 Hb_027746_020--Hb_002676_120 Hb_007545_120 Hb_007545_120 Hb_027746_020--Hb_007545_120 Hb_027746_020--Hb_003050_260 Hb_027746_020--Hb_004137_100 Hb_004586_150 Hb_004586_150 Hb_004137_100--Hb_004586_150 Hb_004137_100--Hb_009193_090 Hb_000184_240 Hb_000184_240 Hb_004137_100--Hb_000184_240 Hb_000600_060 Hb_000600_060 Hb_004137_100--Hb_000600_060 Hb_004137_100--Hb_007545_120 Hb_002391_360 Hb_002391_360 Hb_004137_100--Hb_002391_360 Hb_003464_070 Hb_003464_070 Hb_002685_150--Hb_003464_070 Hb_009615_020 Hb_009615_020 Hb_002685_150--Hb_009615_020 Hb_002685_150--Hb_027746_020 Hb_002685_150--Hb_000023_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95708 2.73989 7.47172 4.48193 1.89739 2.33494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.836516 2.5702 1.31138 8.17206 0.365465

CAGE analysis