Hb_000023_160

Information

Type -
Description -
Location Contig23: 403837-409133
Sequence    

Annotation

kegg
ID tcc:TCM_016666
description hypothetical protein
nr
ID XP_012075077.1
description PREDICTED: uncharacterized protein LOC105636423 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KH37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10815 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23944: 402255-403142 , PASA_asmbl_23945: 403781-405574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_160 0.0 - - PREDICTED: uncharacterized protein LOC105636423 isoform X1 [Jatropha curcas]
2 Hb_002217_470 0.1422136897 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
3 Hb_000317_160 0.1615559982 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
4 Hb_009615_020 0.175297309 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
5 Hb_002685_150 0.2046980327 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
6 Hb_000654_030 0.209510764 - - -
7 Hb_001140_070 0.2142415297 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
8 Hb_002148_020 0.2177023513 - - aldo-keto reductase, putative [Ricinus communis]
9 Hb_000574_280 0.2234096676 - - hypothetical protein POPTR_0006s28780g [Populus trichocarpa]
10 Hb_005725_230 0.2265533912 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
11 Hb_003925_030 0.2296307006 - - conserved hypothetical protein [Ricinus communis]
12 Hb_026549_010 0.2303080804 - - -
13 Hb_004137_100 0.2331385969 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
14 Hb_146868_010 0.233385986 - - -
15 Hb_000029_090 0.2387621166 - - Nicalin precursor, putative [Ricinus communis]
16 Hb_002411_080 0.2403536183 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000120_540 0.241138612 - - translation initiation factor, putative [Ricinus communis]
18 Hb_003813_050 0.2417944977 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
19 Hb_034552_030 0.2426762054 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
20 Hb_007545_120 0.2429854962 - - NADH:cytochrome b5 reductase [Vernicia fordii]

Gene co-expression network

sample Hb_000023_160 Hb_000023_160 Hb_002217_470 Hb_002217_470 Hb_000023_160--Hb_002217_470 Hb_000317_160 Hb_000317_160 Hb_000023_160--Hb_000317_160 Hb_009615_020 Hb_009615_020 Hb_000023_160--Hb_009615_020 Hb_002685_150 Hb_002685_150 Hb_000023_160--Hb_002685_150 Hb_000654_030 Hb_000654_030 Hb_000023_160--Hb_000654_030 Hb_001140_070 Hb_001140_070 Hb_000023_160--Hb_001140_070 Hb_002217_470--Hb_000654_030 Hb_026549_010 Hb_026549_010 Hb_002217_470--Hb_026549_010 Hb_002217_470--Hb_000317_160 Hb_002148_020 Hb_002148_020 Hb_002217_470--Hb_002148_020 Hb_034552_030 Hb_034552_030 Hb_002217_470--Hb_034552_030 Hb_005725_230 Hb_005725_230 Hb_000317_160--Hb_005725_230 Hb_000317_160--Hb_002685_150 Hb_004137_100 Hb_004137_100 Hb_000317_160--Hb_004137_100 Hb_027746_020 Hb_027746_020 Hb_000317_160--Hb_027746_020 Hb_009615_020--Hb_001140_070 Hb_006816_260 Hb_006816_260 Hb_009615_020--Hb_006816_260 Hb_000562_030 Hb_000562_030 Hb_009615_020--Hb_000562_030 Hb_000329_270 Hb_000329_270 Hb_009615_020--Hb_000329_270 Hb_000916_070 Hb_000916_070 Hb_009615_020--Hb_000916_070 Hb_003464_070 Hb_003464_070 Hb_002685_150--Hb_003464_070 Hb_002685_150--Hb_005725_230 Hb_002685_150--Hb_009615_020 Hb_002685_150--Hb_027746_020 Hb_000089_200 Hb_000089_200 Hb_000654_030--Hb_000089_200 Hb_000913_040 Hb_000913_040 Hb_000654_030--Hb_000913_040 Hb_000654_030--Hb_026549_010 Hb_000656_190 Hb_000656_190 Hb_000654_030--Hb_000656_190 Hb_001584_260 Hb_001584_260 Hb_000654_030--Hb_001584_260 Hb_182424_030 Hb_182424_030 Hb_001140_070--Hb_182424_030 Hb_001396_210 Hb_001396_210 Hb_001140_070--Hb_001396_210 Hb_002027_390 Hb_002027_390 Hb_001140_070--Hb_002027_390 Hb_039021_010 Hb_039021_010 Hb_001140_070--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_001140_070--Hb_000345_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.51601 0.104556 0.931509 1.2103 0.657645 0.480257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.371869 1.04451 0.153413 1.46314 0

CAGE analysis