Hb_001140_070

Information

Type -
Description -
Location Contig1140: 129023-130851
Sequence    

Annotation

kegg
ID rcu:RCOM_1496480
description hypothetical protein
nr
ID XP_007038657.1
description Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
swissprot
ID P0CG15
description Chromosome transmission fidelity protein 8 homolog OS=Mus musculus GN=Chtf8 PE=2 SV=1
trembl
ID A0A061G1D0
description Chromosome transmission fidelity protein 8, putative isoform 2 OS=Theobroma cacao GN=TCM_015147 PE=4 SV=1
Gene Ontology
ID GO:0004864
description chromosome transmission fidelity protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04175: 128928-130536 , PASA_asmbl_04177: 130046-130394 , PASA_asmbl_04180: 131653-131788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_070 0.0 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
2 Hb_182424_030 0.1187147237 - - PREDICTED: conserved oligomeric Golgi complex subunit 8 [Vitis vinifera]
3 Hb_001396_210 0.1474028121 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002027_390 0.1512520167 - - shikimate dehydrogenase, putative [Ricinus communis]
5 Hb_009615_020 0.1532832185 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
6 Hb_039021_010 0.1547631321 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
7 Hb_000345_510 0.1553111895 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
8 Hb_000215_090 0.1568140419 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
9 Hb_114336_030 0.1573154551 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
10 Hb_001124_070 0.1632423941 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
11 Hb_003207_180 0.1660138772 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
12 Hb_003106_220 0.1667256728 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
13 Hb_005463_050 0.1673711801 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]
14 Hb_000130_270 0.1690035849 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
15 Hb_003848_040 0.1691305857 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
16 Hb_124373_010 0.169564662 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
17 Hb_133004_010 0.1703625916 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
18 Hb_004994_210 0.1718145275 - - phosphomannomutase family protein [Populus trichocarpa]
19 Hb_002192_010 0.1722039223 - - -
20 Hb_006816_260 0.17322 - - hypothetical protein JCGZ_23244 [Jatropha curcas]

Gene co-expression network

sample Hb_001140_070 Hb_001140_070 Hb_182424_030 Hb_182424_030 Hb_001140_070--Hb_182424_030 Hb_001396_210 Hb_001396_210 Hb_001140_070--Hb_001396_210 Hb_002027_390 Hb_002027_390 Hb_001140_070--Hb_002027_390 Hb_009615_020 Hb_009615_020 Hb_001140_070--Hb_009615_020 Hb_039021_010 Hb_039021_010 Hb_001140_070--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_001140_070--Hb_000345_510 Hb_000731_160 Hb_000731_160 Hb_182424_030--Hb_000731_160 Hb_003848_040 Hb_003848_040 Hb_182424_030--Hb_003848_040 Hb_001472_100 Hb_001472_100 Hb_182424_030--Hb_001472_100 Hb_000270_680 Hb_000270_680 Hb_182424_030--Hb_000270_680 Hb_000185_050 Hb_000185_050 Hb_182424_030--Hb_000185_050 Hb_000297_160 Hb_000297_160 Hb_182424_030--Hb_000297_160 Hb_012340_090 Hb_012340_090 Hb_001396_210--Hb_012340_090 Hb_001025_090 Hb_001025_090 Hb_001396_210--Hb_001025_090 Hb_001396_210--Hb_003848_040 Hb_002092_120 Hb_002092_120 Hb_001396_210--Hb_002092_120 Hb_001105_170 Hb_001105_170 Hb_001396_210--Hb_001105_170 Hb_000270_470 Hb_000270_470 Hb_001396_210--Hb_000270_470 Hb_001221_570 Hb_001221_570 Hb_002027_390--Hb_001221_570 Hb_006538_090 Hb_006538_090 Hb_002027_390--Hb_006538_090 Hb_007894_170 Hb_007894_170 Hb_002027_390--Hb_007894_170 Hb_003041_050 Hb_003041_050 Hb_002027_390--Hb_003041_050 Hb_000555_100 Hb_000555_100 Hb_002027_390--Hb_000555_100 Hb_168893_020 Hb_168893_020 Hb_002027_390--Hb_168893_020 Hb_006816_260 Hb_006816_260 Hb_009615_020--Hb_006816_260 Hb_000562_030 Hb_000562_030 Hb_009615_020--Hb_000562_030 Hb_000023_160 Hb_000023_160 Hb_009615_020--Hb_000023_160 Hb_000329_270 Hb_000329_270 Hb_009615_020--Hb_000329_270 Hb_000916_070 Hb_000916_070 Hb_009615_020--Hb_000916_070 Hb_000580_100 Hb_000580_100 Hb_039021_010--Hb_000580_100 Hb_005144_210 Hb_005144_210 Hb_039021_010--Hb_005144_210 Hb_000836_300 Hb_000836_300 Hb_039021_010--Hb_000836_300 Hb_004079_130 Hb_004079_130 Hb_039021_010--Hb_004079_130 Hb_003050_260 Hb_003050_260 Hb_039021_010--Hb_003050_260 Hb_000617_310 Hb_000617_310 Hb_039021_010--Hb_000617_310 Hb_002272_050 Hb_002272_050 Hb_000345_510--Hb_002272_050 Hb_003213_010 Hb_003213_010 Hb_000345_510--Hb_003213_010 Hb_006132_110 Hb_006132_110 Hb_000345_510--Hb_006132_110 Hb_000875_080 Hb_000875_080 Hb_000345_510--Hb_000875_080 Hb_000049_140 Hb_000049_140 Hb_000345_510--Hb_000049_140 Hb_002163_050 Hb_002163_050 Hb_000345_510--Hb_002163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38643 0.730207 3.91773 2.92432 1.51535 1.13883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15661 2.38846 0.47459 2.9574 0.524441

CAGE analysis