Hb_182424_030

Information

Type -
Description -
Location Contig182424: 26914-32576
Sequence    

Annotation

kegg
ID vvi:100245590
description conserved oligomeric Golgi complex subunit 8
nr
ID XP_002279909.2
description PREDICTED: conserved oligomeric Golgi complex subunit 8 [Vitis vinifera]
swissprot
ID Q9JJA2
description Conserved oligomeric Golgi complex subunit 8 OS=Mus musculus GN=Cog8 PE=2 SV=3
trembl
ID D7STS3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01350 PE=4 SV=1
Gene Ontology
ID GO:0009506
description conserved oligomeric golgi complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182424_030 0.0 - - PREDICTED: conserved oligomeric Golgi complex subunit 8 [Vitis vinifera]
2 Hb_000731_160 0.0928278414 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
3 Hb_003848_040 0.1012900927 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
4 Hb_001472_100 0.1026224863 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
5 Hb_000270_680 0.1053190711 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
6 Hb_000185_050 0.1075716231 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
7 Hb_000297_160 0.1117545618 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
8 Hb_032808_010 0.1126231148 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
9 Hb_000875_080 0.1128644879 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
10 Hb_001396_210 0.1140508806 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000049_140 0.1169905067 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
12 Hb_000465_390 0.1169986923 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
13 Hb_001140_070 0.1187147237 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
14 Hb_002820_050 0.1192437083 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
15 Hb_003207_180 0.1198164363 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
16 Hb_004837_270 0.1202549775 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
17 Hb_006570_140 0.1205616926 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
18 Hb_000215_090 0.1213387803 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
19 Hb_005773_060 0.1217936388 - - defender against cell death, putative [Ricinus communis]
20 Hb_004070_020 0.1221873733 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_182424_030 Hb_182424_030 Hb_000731_160 Hb_000731_160 Hb_182424_030--Hb_000731_160 Hb_003848_040 Hb_003848_040 Hb_182424_030--Hb_003848_040 Hb_001472_100 Hb_001472_100 Hb_182424_030--Hb_001472_100 Hb_000270_680 Hb_000270_680 Hb_182424_030--Hb_000270_680 Hb_000185_050 Hb_000185_050 Hb_182424_030--Hb_000185_050 Hb_000297_160 Hb_000297_160 Hb_182424_030--Hb_000297_160 Hb_000012_250 Hb_000012_250 Hb_000731_160--Hb_000012_250 Hb_002477_300 Hb_002477_300 Hb_000731_160--Hb_002477_300 Hb_146673_010 Hb_146673_010 Hb_000731_160--Hb_146673_010 Hb_000731_160--Hb_001472_100 Hb_006570_140 Hb_006570_140 Hb_000731_160--Hb_006570_140 Hb_000731_160--Hb_000185_050 Hb_001105_170 Hb_001105_170 Hb_003848_040--Hb_001105_170 Hb_012565_070 Hb_012565_070 Hb_003848_040--Hb_012565_070 Hb_012340_090 Hb_012340_090 Hb_003848_040--Hb_012340_090 Hb_003207_180 Hb_003207_180 Hb_003848_040--Hb_003207_180 Hb_000300_260 Hb_000300_260 Hb_003848_040--Hb_000300_260 Hb_003848_040--Hb_001472_100 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_000110_310 Hb_000110_310 Hb_001472_100--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_001472_100--Hb_107879_010 Hb_001472_100--Hb_000270_680 Hb_001472_100--Hb_003207_180 Hb_000007_390 Hb_000007_390 Hb_000270_680--Hb_000007_390 Hb_000270_680--Hb_000297_160 Hb_000270_680--Hb_000110_310 Hb_000270_680--Hb_107879_010 Hb_003943_050 Hb_003943_050 Hb_000270_680--Hb_003943_050 Hb_000185_050--Hb_001472_100 Hb_002946_190 Hb_002946_190 Hb_000185_050--Hb_002946_190 Hb_111036_010 Hb_111036_010 Hb_000185_050--Hb_111036_010 Hb_000690_190 Hb_000690_190 Hb_000185_050--Hb_000690_190 Hb_003942_020 Hb_003942_020 Hb_000185_050--Hb_003942_020 Hb_000875_080 Hb_000875_080 Hb_000297_160--Hb_000875_080 Hb_000336_210 Hb_000336_210 Hb_000297_160--Hb_000336_210 Hb_001959_110 Hb_001959_110 Hb_000297_160--Hb_001959_110 Hb_005144_090 Hb_005144_090 Hb_000297_160--Hb_005144_090 Hb_002272_050 Hb_002272_050 Hb_000297_160--Hb_002272_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33188 0.422027 2.11769 1.36341 1.00851 0.880175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88444 1.87929 0.523486 1.52239 0.765767

CAGE analysis