Hb_009615_020

Information

Type transcription factor
Description TF Family: HMG
Location Contig9615: 10903-12778
Sequence    

Annotation

kegg
ID rcu:RCOM_1454160
description DNA-binding protein MNB1B, putative
nr
ID XP_012068568.1
description PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
swissprot
ID Q8LDF9
description High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1
trembl
ID A0A067KW83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24470 PE=4 SV=1
Gene Ontology
ID GO:0003677
description high mobility group b protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009615_020 0.0 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
2 Hb_001140_070 0.1532832185 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
3 Hb_006816_260 0.1660892149 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
4 Hb_000562_030 0.1690162167 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000023_160 0.175297309 - - PREDICTED: uncharacterized protein LOC105636423 isoform X1 [Jatropha curcas]
6 Hb_000329_270 0.1761597046 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
7 Hb_000916_070 0.1779312442 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
8 Hb_000215_090 0.1784068935 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
9 Hb_010577_030 0.1794493457 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
10 Hb_003849_130 0.1841048652 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
11 Hb_002685_150 0.1854396095 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_000868_050 0.1860944621 - - RAD51 homolog [Populus nigra]
13 Hb_000318_210 0.1863153776 - - PREDICTED: 40S ribosomal protein S12-like isoform X1 [Jatropha curcas]
14 Hb_001124_070 0.1867049628 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
15 Hb_001842_050 0.1899881919 - - PREDICTED: protein BUD31 homolog 1-like [Jatropha curcas]
16 Hb_182424_030 0.1905888946 - - PREDICTED: conserved oligomeric Golgi complex subunit 8 [Vitis vinifera]
17 Hb_000359_150 0.1920111587 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
18 Hb_005000_330 0.1944287629 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001377_450 0.1959546701 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
20 Hb_000392_340 0.1963901082 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]

Gene co-expression network

sample Hb_009615_020 Hb_009615_020 Hb_001140_070 Hb_001140_070 Hb_009615_020--Hb_001140_070 Hb_006816_260 Hb_006816_260 Hb_009615_020--Hb_006816_260 Hb_000562_030 Hb_000562_030 Hb_009615_020--Hb_000562_030 Hb_000023_160 Hb_000023_160 Hb_009615_020--Hb_000023_160 Hb_000329_270 Hb_000329_270 Hb_009615_020--Hb_000329_270 Hb_000916_070 Hb_000916_070 Hb_009615_020--Hb_000916_070 Hb_182424_030 Hb_182424_030 Hb_001140_070--Hb_182424_030 Hb_001396_210 Hb_001396_210 Hb_001140_070--Hb_001396_210 Hb_002027_390 Hb_002027_390 Hb_001140_070--Hb_002027_390 Hb_039021_010 Hb_039021_010 Hb_001140_070--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_001140_070--Hb_000345_510 Hb_001623_060 Hb_001623_060 Hb_006816_260--Hb_001623_060 Hb_007894_170 Hb_007894_170 Hb_006816_260--Hb_007894_170 Hb_028396_010 Hb_028396_010 Hb_006816_260--Hb_028396_010 Hb_001437_060 Hb_001437_060 Hb_006816_260--Hb_001437_060 Hb_004044_040 Hb_004044_040 Hb_006816_260--Hb_004044_040 Hb_005054_210 Hb_005054_210 Hb_006816_260--Hb_005054_210 Hb_005773_060 Hb_005773_060 Hb_000562_030--Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_000562_030--Hb_002811_260 Hb_000160_060 Hb_000160_060 Hb_000562_030--Hb_000160_060 Hb_000359_150 Hb_000359_150 Hb_000562_030--Hb_000359_150 Hb_003544_020 Hb_003544_020 Hb_000562_030--Hb_003544_020 Hb_000690_190 Hb_000690_190 Hb_000562_030--Hb_000690_190 Hb_002217_470 Hb_002217_470 Hb_000023_160--Hb_002217_470 Hb_000317_160 Hb_000317_160 Hb_000023_160--Hb_000317_160 Hb_002685_150 Hb_002685_150 Hb_000023_160--Hb_002685_150 Hb_000654_030 Hb_000654_030 Hb_000023_160--Hb_000654_030 Hb_000023_160--Hb_001140_070 Hb_048476_100 Hb_048476_100 Hb_000329_270--Hb_048476_100 Hb_003849_130 Hb_003849_130 Hb_000329_270--Hb_003849_130 Hb_055062_020 Hb_055062_020 Hb_000329_270--Hb_055062_020 Hb_000027_040 Hb_000027_040 Hb_000329_270--Hb_000027_040 Hb_000258_250 Hb_000258_250 Hb_000329_270--Hb_000258_250 Hb_000803_200 Hb_000803_200 Hb_000329_270--Hb_000803_200 Hb_002960_150 Hb_002960_150 Hb_000916_070--Hb_002960_150 Hb_000622_130 Hb_000622_130 Hb_000916_070--Hb_000622_130 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_124373_010 Hb_124373_010 Hb_000916_070--Hb_124373_010 Hb_010368_050 Hb_010368_050 Hb_000916_070--Hb_010368_050 Hb_003001_090 Hb_003001_090 Hb_000916_070--Hb_003001_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42845 0.206901 4.72473 4.53957 1.52294 1.66629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53411 4.4535 1.05238 2.90156 0.233424

CAGE analysis