Hb_000656_190

Information

Type -
Description -
Location Contig656: 125610-129238
Sequence    

Annotation

kegg
ID cit:102618457
description nucleoside diphosphate kinase 6-like
nr
ID XP_012068858.1
description PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
swissprot
ID Q6NLG3
description Probable nucleoside diphosphate kinase 5 OS=Arabidopsis thaliana GN=At1g17410 PE=2 SV=1
trembl
ID A0A067L9B5
description Nucleoside diphosphate kinase OS=Jatropha curcas GN=JCGZ_24678 PE=3 SV=1
Gene Ontology
ID GO:0004550
description probable nucleoside diphosphate kinase 5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52725: 125905-127490 , PASA_asmbl_52726: 127537-129144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_190 0.0 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
2 Hb_000889_010 0.1557716038 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
3 Hb_000913_040 0.157253685 - - Methyltransferase-related protein, putative [Theobroma cacao]
4 Hb_004449_180 0.1603202206 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
5 Hb_001208_040 0.164312414 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
6 Hb_007390_020 0.1701245927 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
7 Hb_002477_010 0.1808278104 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006384_010 0.1814845401 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_002498_270 0.1835465872 - - prephenate dehydratase, putative [Ricinus communis]
10 Hb_000165_080 0.1852394354 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
11 Hb_007943_200 0.1857348646 - - Uncharacterized protein isoform 2 [Theobroma cacao]
12 Hb_000077_180 0.1871970116 - - -
13 Hb_000580_100 0.187442483 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
14 Hb_002073_010 0.1878264701 - - -
15 Hb_116420_010 0.1898689304 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_005054_220 0.1915419316 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
17 Hb_004357_050 0.1915641251 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
18 Hb_000684_520 0.1917998313 - - glutathione S-transferase L3-like [Jatropha curcas]
19 Hb_090158_010 0.1921177749 - - hypothetical protein RCOM_1968400 [Ricinus communis]
20 Hb_000116_560 0.1921777062 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000656_190 Hb_000656_190 Hb_000889_010 Hb_000889_010 Hb_000656_190--Hb_000889_010 Hb_000913_040 Hb_000913_040 Hb_000656_190--Hb_000913_040 Hb_004449_180 Hb_004449_180 Hb_000656_190--Hb_004449_180 Hb_001208_040 Hb_001208_040 Hb_000656_190--Hb_001208_040 Hb_007390_020 Hb_007390_020 Hb_000656_190--Hb_007390_020 Hb_002477_010 Hb_002477_010 Hb_000656_190--Hb_002477_010 Hb_009898_040 Hb_009898_040 Hb_000889_010--Hb_009898_040 Hb_000889_010--Hb_004449_180 Hb_000684_520 Hb_000684_520 Hb_000889_010--Hb_000684_520 Hb_001799_060 Hb_001799_060 Hb_000889_010--Hb_001799_060 Hb_168893_020 Hb_168893_020 Hb_000889_010--Hb_168893_020 Hb_001148_090 Hb_001148_090 Hb_000889_010--Hb_001148_090 Hb_000580_100 Hb_000580_100 Hb_000913_040--Hb_000580_100 Hb_000953_130 Hb_000953_130 Hb_000913_040--Hb_000953_130 Hb_000116_560 Hb_000116_560 Hb_000913_040--Hb_000116_560 Hb_000913_040--Hb_007390_020 Hb_011671_480 Hb_011671_480 Hb_000913_040--Hb_011671_480 Hb_001584_260 Hb_001584_260 Hb_000913_040--Hb_001584_260 Hb_000179_270 Hb_000179_270 Hb_004449_180--Hb_000179_270 Hb_002272_270 Hb_002272_270 Hb_004449_180--Hb_002272_270 Hb_011344_200 Hb_011344_200 Hb_004449_180--Hb_011344_200 Hb_000555_100 Hb_000555_100 Hb_004449_180--Hb_000555_100 Hb_000087_070 Hb_000087_070 Hb_004449_180--Hb_000087_070 Hb_001208_030 Hb_001208_030 Hb_001208_040--Hb_001208_030 Hb_002960_130 Hb_002960_130 Hb_001208_040--Hb_002960_130 Hb_000217_020 Hb_000217_020 Hb_001208_040--Hb_000217_020 Hb_000016_060 Hb_000016_060 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_001208_040--Hb_007390_020 Hb_019181_030 Hb_019181_030 Hb_007390_020--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_007390_020--Hb_000152_600 Hb_005054_220 Hb_005054_220 Hb_007390_020--Hb_005054_220 Hb_004176_070 Hb_004176_070 Hb_007390_020--Hb_004176_070 Hb_010368_050 Hb_010368_050 Hb_007390_020--Hb_010368_050 Hb_012022_050 Hb_012022_050 Hb_002477_010--Hb_012022_050 Hb_000288_020 Hb_000288_020 Hb_002477_010--Hb_000288_020 Hb_002876_020 Hb_002876_020 Hb_002477_010--Hb_002876_020 Hb_003305_020 Hb_003305_020 Hb_002477_010--Hb_003305_020 Hb_032920_070 Hb_032920_070 Hb_002477_010--Hb_032920_070 Hb_009680_020 Hb_009680_020 Hb_002477_010--Hb_009680_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.283266 1.44631 3.61487 7.91177 1.05956 1.94061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49663 4.62084 0.525303 4.62903 1.28168

CAGE analysis