Hb_000089_200

Information

Type -
Description -
Location Contig89: 224895-228571
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN72393.1
description hypothetical protein VITISV_019292 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BIY2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019292 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase homolog mmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_200 0.0 - - hypothetical protein VITISV_019292 [Vitis vinifera]
2 Hb_000654_030 0.1788300621 - - -
3 Hb_001329_020 0.2301237093 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
4 Hb_000110_380 0.2333178708 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
5 Hb_002259_060 0.246085009 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X4 [Jatropha curcas]
6 Hb_011485_090 0.246665802 - - -
7 Hb_000656_190 0.2530218218 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
8 Hb_002686_260 0.2541585051 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
9 Hb_000707_040 0.2548840745 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
10 Hb_001269_250 0.2557982132 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
11 Hb_050959_010 0.2558475314 - - -
12 Hb_001053_210 0.2561669965 - - -
13 Hb_000261_170 0.2561972846 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_004117_330 0.2603997011 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001584_260 0.2627504388 - - zinc finger protein, putative [Ricinus communis]
16 Hb_128473_010 0.2639083145 - - -
17 Hb_000913_040 0.2694684858 - - Methyltransferase-related protein, putative [Theobroma cacao]
18 Hb_001366_060 0.2712248082 - - -
19 Hb_005408_070 0.2743726887 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
20 Hb_002217_470 0.2753935094 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]

Gene co-expression network

sample Hb_000089_200 Hb_000089_200 Hb_000654_030 Hb_000654_030 Hb_000089_200--Hb_000654_030 Hb_001329_020 Hb_001329_020 Hb_000089_200--Hb_001329_020 Hb_000110_380 Hb_000110_380 Hb_000089_200--Hb_000110_380 Hb_002259_060 Hb_002259_060 Hb_000089_200--Hb_002259_060 Hb_011485_090 Hb_011485_090 Hb_000089_200--Hb_011485_090 Hb_000656_190 Hb_000656_190 Hb_000089_200--Hb_000656_190 Hb_002217_470 Hb_002217_470 Hb_000654_030--Hb_002217_470 Hb_000913_040 Hb_000913_040 Hb_000654_030--Hb_000913_040 Hb_026549_010 Hb_026549_010 Hb_000654_030--Hb_026549_010 Hb_000654_030--Hb_000656_190 Hb_001584_260 Hb_001584_260 Hb_000654_030--Hb_001584_260 Hb_000302_100 Hb_000302_100 Hb_001329_020--Hb_000302_100 Hb_002122_060 Hb_002122_060 Hb_001329_020--Hb_002122_060 Hb_004117_330 Hb_004117_330 Hb_001329_020--Hb_004117_330 Hb_003536_090 Hb_003536_090 Hb_001329_020--Hb_003536_090 Hb_012753_180 Hb_012753_180 Hb_001329_020--Hb_012753_180 Hb_000707_040 Hb_000707_040 Hb_001329_020--Hb_000707_040 Hb_005813_010 Hb_005813_010 Hb_000110_380--Hb_005813_010 Hb_032225_030 Hb_032225_030 Hb_000110_380--Hb_032225_030 Hb_028001_020 Hb_028001_020 Hb_000110_380--Hb_028001_020 Hb_002539_040 Hb_002539_040 Hb_000110_380--Hb_002539_040 Hb_001170_010 Hb_001170_010 Hb_000110_380--Hb_001170_010 Hb_005408_070 Hb_005408_070 Hb_000110_380--Hb_005408_070 Hb_002874_130 Hb_002874_130 Hb_002259_060--Hb_002874_130 Hb_022250_150 Hb_022250_150 Hb_002259_060--Hb_022250_150 Hb_008053_060 Hb_008053_060 Hb_002259_060--Hb_008053_060 Hb_004785_040 Hb_004785_040 Hb_002259_060--Hb_004785_040 Hb_005970_010 Hb_005970_010 Hb_002259_060--Hb_005970_010 Hb_089140_040 Hb_089140_040 Hb_002259_060--Hb_089140_040 Hb_155541_010 Hb_155541_010 Hb_011485_090--Hb_155541_010 Hb_118228_010 Hb_118228_010 Hb_011485_090--Hb_118228_010 Hb_000926_230 Hb_000926_230 Hb_011485_090--Hb_000926_230 Hb_006907_100 Hb_006907_100 Hb_011485_090--Hb_006907_100 Hb_000302_130 Hb_000302_130 Hb_011485_090--Hb_000302_130 Hb_089140_120 Hb_089140_120 Hb_011485_090--Hb_089140_120 Hb_000889_010 Hb_000889_010 Hb_000656_190--Hb_000889_010 Hb_000656_190--Hb_000913_040 Hb_004449_180 Hb_004449_180 Hb_000656_190--Hb_004449_180 Hb_001208_040 Hb_001208_040 Hb_000656_190--Hb_001208_040 Hb_007390_020 Hb_007390_020 Hb_000656_190--Hb_007390_020 Hb_002477_010 Hb_002477_010 Hb_000656_190--Hb_002477_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0833595 0.141183 0.229812 1.02067 0.120223 0.037103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.193322 0.303886 0 0.435433 0

CAGE analysis