Hb_118228_010

Information

Type -
Description -
Location Contig118228: 1527-1919
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14780g
description POPTRDRAFT_572931; pirin-like family protein
nr
ID XP_012066253.1
description PREDICTED: pirin-like protein [Jatropha curcas]
swissprot
ID Q9SEE4
description Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A067L6M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23820 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118228_010 0.0 - - PREDICTED: pirin-like protein [Jatropha curcas]
2 Hb_155541_010 0.1772272316 - - -
3 Hb_011485_090 0.1857234647 - - -
4 Hb_001828_100 0.2023346905 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
5 Hb_074836_010 0.2410139537 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010913_010 0.2430093625 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_000261_170 0.2498168703 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_128473_010 0.2535067834 - - -
9 Hb_004785_050 0.2717355566 - - PREDICTED: serine decarboxylase [Jatropha curcas]
10 Hb_000707_040 0.2731499453 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
11 Hb_002243_050 0.2731649209 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
12 Hb_001377_280 0.2755439315 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
13 Hb_009051_020 0.2814318142 - - Thioredoxin O1 [Morus notabilis]
14 Hb_002228_100 0.2858451914 - - calcineurin-like phosphoesterase [Manihot esculenta]
15 Hb_006907_100 0.2865915922 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
16 Hb_001269_290 0.2950636249 - - PREDICTED: uncharacterized protein LOC103438859 [Malus domestica]
17 Hb_006642_030 0.2952086094 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
18 Hb_000743_030 0.2956551958 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
19 Hb_089140_120 0.2972721655 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
20 Hb_000302_130 0.3014522507 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_118228_010 Hb_118228_010 Hb_155541_010 Hb_155541_010 Hb_118228_010--Hb_155541_010 Hb_011485_090 Hb_011485_090 Hb_118228_010--Hb_011485_090 Hb_001828_100 Hb_001828_100 Hb_118228_010--Hb_001828_100 Hb_074836_010 Hb_074836_010 Hb_118228_010--Hb_074836_010 Hb_010913_010 Hb_010913_010 Hb_118228_010--Hb_010913_010 Hb_000261_170 Hb_000261_170 Hb_118228_010--Hb_000261_170 Hb_155541_010--Hb_011485_090 Hb_005928_050 Hb_005928_050 Hb_155541_010--Hb_005928_050 Hb_000302_130 Hb_000302_130 Hb_155541_010--Hb_000302_130 Hb_155541_010--Hb_010913_010 Hb_006907_100 Hb_006907_100 Hb_155541_010--Hb_006907_100 Hb_000926_230 Hb_000926_230 Hb_011485_090--Hb_000926_230 Hb_011485_090--Hb_006907_100 Hb_011485_090--Hb_000302_130 Hb_089140_120 Hb_089140_120 Hb_011485_090--Hb_089140_120 Hb_001828_100--Hb_000261_170 Hb_004158_100 Hb_004158_100 Hb_001828_100--Hb_004158_100 Hb_000109_230 Hb_000109_230 Hb_001828_100--Hb_000109_230 Hb_128473_010 Hb_128473_010 Hb_001828_100--Hb_128473_010 Hb_000032_050 Hb_000032_050 Hb_001828_100--Hb_000032_050 Hb_074836_010--Hb_000926_230 Hb_009620_090 Hb_009620_090 Hb_074836_010--Hb_009620_090 Hb_074836_010--Hb_155541_010 Hb_164255_010 Hb_164255_010 Hb_074836_010--Hb_164255_010 Hb_001545_050 Hb_001545_050 Hb_074836_010--Hb_001545_050 Hb_010913_010--Hb_006907_100 Hb_000099_230 Hb_000099_230 Hb_010913_010--Hb_000099_230 Hb_010913_010--Hb_011485_090 Hb_004846_100 Hb_004846_100 Hb_010913_010--Hb_004846_100 Hb_000261_170--Hb_128473_010 Hb_001355_120 Hb_001355_120 Hb_000261_170--Hb_001355_120 Hb_000649_340 Hb_000649_340 Hb_000261_170--Hb_000649_340 Hb_000261_170--Hb_004158_100 Hb_004785_050 Hb_004785_050 Hb_000261_170--Hb_004785_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4785 3.74274 3.41906 17.3063 2.44433 0.71376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.21697 5.02104 0 0 0

CAGE analysis