Hb_000099_230

Information

Type -
Description -
Location Contig99: 287706-289722
Sequence    

Annotation

kegg
ID tcc:TCM_006073
description F-box/LRR-repeat protein 23, putative isoform 1
nr
ID XP_012480661.1
description PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
swissprot
ID Q9M0U9
description F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1
trembl
ID A0A0D2NIS0
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G267100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64753: 287715-288206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_230 0.0 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
2 Hb_127008_010 0.1998003229 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
3 Hb_069022_010 0.2176299345 - - conserved hypothetical protein [Ricinus communis]
4 Hb_014783_010 0.2192722848 - - cold-inducible RNA binding protein, putative [Ricinus communis]
5 Hb_000445_190 0.2193772617 - - -
6 Hb_003371_180 0.2255405665 - - -
7 Hb_008667_040 0.2259439924 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
8 Hb_000224_200 0.2289376096 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
9 Hb_002893_120 0.2297853829 - - PREDICTED: uncharacterized protein LOC105637692 [Jatropha curcas]
10 Hb_010913_010 0.2383952432 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_019516_020 0.2414597964 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010068_100 0.2435369519 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
13 Hb_155541_010 0.247706501 - - -
14 Hb_029510_020 0.2482311301 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
15 Hb_004846_100 0.2517152742 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
16 Hb_009486_150 0.2543384871 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
17 Hb_003058_080 0.2555135981 - - Chaperonin 10 isoform 1 [Theobroma cacao]
18 Hb_178227_010 0.2563527537 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
19 Hb_000144_080 0.2582699466 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
20 Hb_001504_050 0.2589232209 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]

Gene co-expression network

sample Hb_000099_230 Hb_000099_230 Hb_127008_010 Hb_127008_010 Hb_000099_230--Hb_127008_010 Hb_069022_010 Hb_069022_010 Hb_000099_230--Hb_069022_010 Hb_014783_010 Hb_014783_010 Hb_000099_230--Hb_014783_010 Hb_000445_190 Hb_000445_190 Hb_000099_230--Hb_000445_190 Hb_003371_180 Hb_003371_180 Hb_000099_230--Hb_003371_180 Hb_008667_040 Hb_008667_040 Hb_000099_230--Hb_008667_040 Hb_001504_050 Hb_001504_050 Hb_127008_010--Hb_001504_050 Hb_000144_080 Hb_000144_080 Hb_127008_010--Hb_000144_080 Hb_009486_150 Hb_009486_150 Hb_127008_010--Hb_009486_150 Hb_027760_010 Hb_027760_010 Hb_127008_010--Hb_027760_010 Hb_001377_400 Hb_001377_400 Hb_127008_010--Hb_001377_400 Hb_127008_010--Hb_003371_180 Hb_069022_010--Hb_000445_190 Hb_005714_050 Hb_005714_050 Hb_069022_010--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_069022_010--Hb_032974_010 Hb_000975_270 Hb_000975_270 Hb_069022_010--Hb_000975_270 Hb_000111_230 Hb_000111_230 Hb_069022_010--Hb_000111_230 Hb_000268_010 Hb_000268_010 Hb_014783_010--Hb_000268_010 Hb_000186_190 Hb_000186_190 Hb_014783_010--Hb_000186_190 Hb_003943_130 Hb_003943_130 Hb_014783_010--Hb_003943_130 Hb_002289_120 Hb_002289_120 Hb_014783_010--Hb_002289_120 Hb_001357_100 Hb_001357_100 Hb_014783_010--Hb_001357_100 Hb_000101_270 Hb_000101_270 Hb_014783_010--Hb_000101_270 Hb_148891_010 Hb_148891_010 Hb_000445_190--Hb_148891_010 Hb_001017_080 Hb_001017_080 Hb_000445_190--Hb_001017_080 Hb_000445_190--Hb_005714_050 Hb_000445_190--Hb_032974_010 Hb_019249_010 Hb_019249_010 Hb_003371_180--Hb_019249_010 Hb_000788_130 Hb_000788_130 Hb_003371_180--Hb_000788_130 Hb_181288_010 Hb_181288_010 Hb_003371_180--Hb_181288_010 Hb_000465_040 Hb_000465_040 Hb_003371_180--Hb_000465_040 Hb_010407_040 Hb_010407_040 Hb_003371_180--Hb_010407_040 Hb_013405_060 Hb_013405_060 Hb_003371_180--Hb_013405_060 Hb_002045_140 Hb_002045_140 Hb_008667_040--Hb_002045_140 Hb_000264_290 Hb_000264_290 Hb_008667_040--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_008667_040--Hb_100105_010 Hb_133311_010 Hb_133311_010 Hb_008667_040--Hb_133311_010 Hb_010068_100 Hb_010068_100 Hb_008667_040--Hb_010068_100 Hb_007123_060 Hb_007123_060 Hb_008667_040--Hb_007123_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25986 0.977247 2.08737 1.96665 2.45545 0.750596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2521 5.31995 0 0 0.135605

CAGE analysis