Hb_000445_190

Information

Type -
Description -
Location Contig445: 204290-208266
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_190 0.0 - - -
2 Hb_148891_010 0.1584401801 - - -
3 Hb_069022_010 0.1704826692 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000099_230 0.2193772617 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
5 Hb_001017_080 0.2486743703 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
6 Hb_005714_050 0.2619674211 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
7 Hb_032974_010 0.2626884036 - - -
8 Hb_010913_010 0.2696958898 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
9 Hb_000111_230 0.269866253 - - -
10 Hb_000803_040 0.2774643057 - - -
11 Hb_002685_180 0.2799580618 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_004931_010 0.280173623 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
13 Hb_127008_010 0.2813517889 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
14 Hb_019516_020 0.2845807413 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000453_210 0.2846735219 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
16 Hb_000025_440 0.2848551177 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
17 Hb_032202_030 0.2853971761 - - -
18 Hb_004102_030 0.2867890148 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
19 Hb_000224_200 0.2915799664 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
20 Hb_001504_050 0.2953110297 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]

Gene co-expression network

sample Hb_000445_190 Hb_000445_190 Hb_148891_010 Hb_148891_010 Hb_000445_190--Hb_148891_010 Hb_069022_010 Hb_069022_010 Hb_000445_190--Hb_069022_010 Hb_000099_230 Hb_000099_230 Hb_000445_190--Hb_000099_230 Hb_001017_080 Hb_001017_080 Hb_000445_190--Hb_001017_080 Hb_005714_050 Hb_005714_050 Hb_000445_190--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_000445_190--Hb_032974_010 Hb_004102_030 Hb_004102_030 Hb_148891_010--Hb_004102_030 Hb_148891_010--Hb_001017_080 Hb_004931_010 Hb_004931_010 Hb_148891_010--Hb_004931_010 Hb_000803_040 Hb_000803_040 Hb_148891_010--Hb_000803_040 Hb_001495_060 Hb_001495_060 Hb_148891_010--Hb_001495_060 Hb_069022_010--Hb_005714_050 Hb_069022_010--Hb_032974_010 Hb_069022_010--Hb_000099_230 Hb_000975_270 Hb_000975_270 Hb_069022_010--Hb_000975_270 Hb_000111_230 Hb_000111_230 Hb_069022_010--Hb_000111_230 Hb_127008_010 Hb_127008_010 Hb_000099_230--Hb_127008_010 Hb_014783_010 Hb_014783_010 Hb_000099_230--Hb_014783_010 Hb_003371_180 Hb_003371_180 Hb_000099_230--Hb_003371_180 Hb_008667_040 Hb_008667_040 Hb_000099_230--Hb_008667_040 Hb_000025_440 Hb_000025_440 Hb_001017_080--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_001017_080--Hb_156503_040 Hb_109578_010 Hb_109578_010 Hb_001017_080--Hb_109578_010 Hb_000500_210 Hb_000500_210 Hb_001017_080--Hb_000500_210 Hb_001017_080--Hb_004931_010 Hb_001017_080--Hb_000975_270 Hb_005714_050--Hb_032974_010 Hb_005714_050--Hb_000975_270 Hb_005714_050--Hb_000111_230 Hb_005714_050--Hb_000025_440 Hb_005714_050--Hb_156503_040 Hb_032974_010--Hb_000975_270 Hb_084889_010 Hb_084889_010 Hb_032974_010--Hb_084889_010 Hb_032974_010--Hb_001017_080 Hb_032974_010--Hb_000111_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.179106 0.113988 0.129677 0.165505 0.284363 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.584125 0.612126 0 0.0313338 0

CAGE analysis