Hb_032974_010

Information

Type -
Description -
Location Contig32974: 4789-5475
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032974_010 0.0 - - -
2 Hb_000975_270 0.1542210402 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
3 Hb_005714_050 0.1739864707 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
4 Hb_069022_010 0.1954430828 - - conserved hypothetical protein [Ricinus communis]
5 Hb_084889_010 0.2235776845 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
6 Hb_001017_080 0.2349917595 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
7 Hb_000111_230 0.235551646 - - -
8 Hb_186158_010 0.2358105482 - - conserved hypothetical protein [Ricinus communis]
9 Hb_182005_010 0.2388661889 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
10 Hb_004102_030 0.2415562281 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
11 Hb_000179_150 0.2462218292 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
12 Hb_109578_010 0.2512793379 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000445_190 0.2626884036 - - -
14 Hb_000500_210 0.2638609779 - - -
15 Hb_013492_010 0.2655915603 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
16 Hb_156503_040 0.2668738435 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
17 Hb_004241_010 0.2669430398 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
18 Hb_021906_010 0.2670324158 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
19 Hb_001488_400 0.2674934272 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
20 Hb_005199_010 0.2687442547 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_032974_010 Hb_032974_010 Hb_000975_270 Hb_000975_270 Hb_032974_010--Hb_000975_270 Hb_005714_050 Hb_005714_050 Hb_032974_010--Hb_005714_050 Hb_069022_010 Hb_069022_010 Hb_032974_010--Hb_069022_010 Hb_084889_010 Hb_084889_010 Hb_032974_010--Hb_084889_010 Hb_001017_080 Hb_001017_080 Hb_032974_010--Hb_001017_080 Hb_000111_230 Hb_000111_230 Hb_032974_010--Hb_000111_230 Hb_000975_270--Hb_005714_050 Hb_186158_010 Hb_186158_010 Hb_000975_270--Hb_186158_010 Hb_011224_040 Hb_011224_040 Hb_000975_270--Hb_011224_040 Hb_000046_200 Hb_000046_200 Hb_000975_270--Hb_000046_200 Hb_000975_270--Hb_069022_010 Hb_005714_050--Hb_069022_010 Hb_005714_050--Hb_000111_230 Hb_000025_440 Hb_000025_440 Hb_005714_050--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_005714_050--Hb_156503_040 Hb_000445_190 Hb_000445_190 Hb_069022_010--Hb_000445_190 Hb_000099_230 Hb_000099_230 Hb_069022_010--Hb_000099_230 Hb_069022_010--Hb_000111_230 Hb_000179_150 Hb_000179_150 Hb_084889_010--Hb_000179_150 Hb_109578_010 Hb_109578_010 Hb_084889_010--Hb_109578_010 Hb_004102_030 Hb_004102_030 Hb_084889_010--Hb_004102_030 Hb_084889_010--Hb_000975_270 Hb_084889_010--Hb_001017_080 Hb_001017_080--Hb_000025_440 Hb_001017_080--Hb_156503_040 Hb_001017_080--Hb_109578_010 Hb_000500_210 Hb_000500_210 Hb_001017_080--Hb_000500_210 Hb_004931_010 Hb_004931_010 Hb_001017_080--Hb_004931_010 Hb_001017_080--Hb_000975_270 Hb_004241_010 Hb_004241_010 Hb_000111_230--Hb_004241_010 Hb_000414_150 Hb_000414_150 Hb_000111_230--Hb_000414_150 Hb_002157_090 Hb_002157_090 Hb_000111_230--Hb_002157_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.224016 0.222957 0.422109 0.845307 0.214256 0.221183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59265 2.46059 0 0 0

CAGE analysis