Hb_000046_200

Information

Type -
Description -
Location Contig46: 178725-183810
Sequence    

Annotation

kegg
ID rcu:RCOM_0679510
description shikimate dehydrogenase, putative (EC:1.1.1.25 4.2.1.10)
nr
ID XP_012069424.1
description PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SQT8
description Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1
trembl
ID A0A067L7F9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02032 PE=3 SV=1
Gene Ontology
ID GO:0003855
description bifunctional 3-dehydroquinate dehydratase shikimate chloroplastic-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_200 0.0 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
2 Hb_011224_040 0.164584111 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
3 Hb_000915_100 0.1736439016 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
4 Hb_001842_120 0.1829806177 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_000500_210 0.1987087006 - - -
6 Hb_000975_270 0.2169890483 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
7 Hb_001425_110 0.2191676804 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
8 Hb_186158_010 0.2206606716 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000300_210 0.2285439196 - - gd2b, putative [Ricinus communis]
10 Hb_187024_070 0.234149126 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
11 Hb_001140_240 0.2350142725 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_001101_010 0.2390097549 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
13 Hb_008887_040 0.2419179876 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
14 Hb_000270_730 0.243158266 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
15 Hb_002526_020 0.2445486289 - - -
16 Hb_001504_320 0.2448797711 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
17 Hb_003837_020 0.2471789673 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
18 Hb_000175_580 0.25106096 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
19 Hb_183612_080 0.2547789095 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
20 Hb_004755_030 0.2550435839 - - EG964 [Manihot glaziovii]

Gene co-expression network

sample Hb_000046_200 Hb_000046_200 Hb_011224_040 Hb_011224_040 Hb_000046_200--Hb_011224_040 Hb_000915_100 Hb_000915_100 Hb_000046_200--Hb_000915_100 Hb_001842_120 Hb_001842_120 Hb_000046_200--Hb_001842_120 Hb_000500_210 Hb_000500_210 Hb_000046_200--Hb_000500_210 Hb_000975_270 Hb_000975_270 Hb_000046_200--Hb_000975_270 Hb_001425_110 Hb_001425_110 Hb_000046_200--Hb_001425_110 Hb_011224_040--Hb_000500_210 Hb_002526_020 Hb_002526_020 Hb_011224_040--Hb_002526_020 Hb_000434_020 Hb_000434_020 Hb_011224_040--Hb_000434_020 Hb_004429_110 Hb_004429_110 Hb_011224_040--Hb_004429_110 Hb_011224_040--Hb_000975_270 Hb_000345_430 Hb_000345_430 Hb_000915_100--Hb_000345_430 Hb_000915_100--Hb_001842_120 Hb_000915_100--Hb_000500_210 Hb_000879_210 Hb_000879_210 Hb_000915_100--Hb_000879_210 Hb_004755_030 Hb_004755_030 Hb_000915_100--Hb_004755_030 Hb_183612_080 Hb_183612_080 Hb_001842_120--Hb_183612_080 Hb_001504_320 Hb_001504_320 Hb_001842_120--Hb_001504_320 Hb_001842_120--Hb_001425_110 Hb_001842_080 Hb_001842_080 Hb_001842_120--Hb_001842_080 Hb_000270_730 Hb_000270_730 Hb_001842_120--Hb_000270_730 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_000500_210--Hb_004755_030 Hb_032974_010 Hb_032974_010 Hb_000975_270--Hb_032974_010 Hb_005714_050 Hb_005714_050 Hb_000975_270--Hb_005714_050 Hb_186158_010 Hb_186158_010 Hb_000975_270--Hb_186158_010 Hb_069022_010 Hb_069022_010 Hb_000975_270--Hb_069022_010 Hb_001425_110--Hb_001504_320 Hb_000300_210 Hb_000300_210 Hb_001425_110--Hb_000300_210 Hb_000387_060 Hb_000387_060 Hb_001425_110--Hb_000387_060 Hb_000329_660 Hb_000329_660 Hb_001425_110--Hb_000329_660 Hb_000264_130 Hb_000264_130 Hb_001425_110--Hb_000264_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0284558 0.0141687 0.0558817 0.0673478 0 0.0661163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.778164 1.17337 0.0478634 0 0.05329

CAGE analysis