Hb_000264_130

Information

Type -
Description -
Location Contig264: 121634-122707
Sequence    

Annotation

kegg
ID brp:103870402
description uncharacterized LOC103870402
nr
ID XP_009146774.1
description PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
swissprot
ID -
description -
trembl
ID A0A068UN70
description Coffea canephora DH200=94 genomic scaffold, scaffold_40 OS=Coffea canephora GN=GSCOC_T00030160001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_130 0.0 - - PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
2 Hb_001425_110 0.1694779433 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
3 Hb_023051_020 0.1700121756 - - -
4 Hb_135585_010 0.189888681 - - -
5 Hb_001425_070 0.1899128534 - - -
6 Hb_034482_040 0.1983062623 - - aspartate kinase, partial [Francisella tularensis]
7 Hb_091433_030 0.2031475685 - - -
8 Hb_012022_100 0.208119901 - - CPRD49 family protein [Populus trichocarpa]
9 Hb_128524_010 0.2100524119 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
10 Hb_007807_010 0.2126108691 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
11 Hb_000387_060 0.2158588418 - - -
12 Hb_003226_240 0.2173314614 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
13 Hb_000792_120 0.2204696187 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
14 Hb_000300_210 0.2215196539 - - gd2b, putative [Ricinus communis]
15 Hb_001425_060 0.2218045863 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002326_170 0.2263882394 - - Protein Z, putative [Ricinus communis]
17 Hb_002989_040 0.2274488527 - - hypothetical protein 1 [Hevea brasiliensis]
18 Hb_113635_010 0.2289159092 - - -
19 Hb_001504_320 0.2302908941 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
20 Hb_001433_100 0.2304828598 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_130 Hb_000264_130 Hb_001425_110 Hb_001425_110 Hb_000264_130--Hb_001425_110 Hb_023051_020 Hb_023051_020 Hb_000264_130--Hb_023051_020 Hb_135585_010 Hb_135585_010 Hb_000264_130--Hb_135585_010 Hb_001425_070 Hb_001425_070 Hb_000264_130--Hb_001425_070 Hb_034482_040 Hb_034482_040 Hb_000264_130--Hb_034482_040 Hb_091433_030 Hb_091433_030 Hb_000264_130--Hb_091433_030 Hb_001504_320 Hb_001504_320 Hb_001425_110--Hb_001504_320 Hb_000300_210 Hb_000300_210 Hb_001425_110--Hb_000300_210 Hb_000387_060 Hb_000387_060 Hb_001425_110--Hb_000387_060 Hb_000329_660 Hb_000329_660 Hb_001425_110--Hb_000329_660 Hb_001842_120 Hb_001842_120 Hb_001425_110--Hb_001842_120 Hb_002989_040 Hb_002989_040 Hb_023051_020--Hb_002989_040 Hb_003226_240 Hb_003226_240 Hb_023051_020--Hb_003226_240 Hb_023051_020--Hb_034482_040 Hb_113635_010 Hb_113635_010 Hb_023051_020--Hb_113635_010 Hb_023051_020--Hb_001425_070 Hb_023051_020--Hb_091433_030 Hb_053373_010 Hb_053373_010 Hb_135585_010--Hb_053373_010 Hb_128524_010 Hb_128524_010 Hb_135585_010--Hb_128524_010 Hb_005834_030 Hb_005834_030 Hb_135585_010--Hb_005834_030 Hb_001105_080 Hb_001105_080 Hb_135585_010--Hb_001105_080 Hb_005396_140 Hb_005396_140 Hb_135585_010--Hb_005396_140 Hb_140618_010 Hb_140618_010 Hb_135585_010--Hb_140618_010 Hb_001425_060 Hb_001425_060 Hb_001425_070--Hb_001425_060 Hb_001425_070--Hb_091433_030 Hb_004461_020 Hb_004461_020 Hb_001425_070--Hb_004461_020 Hb_001143_070 Hb_001143_070 Hb_001425_070--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_001425_070--Hb_000103_030 Hb_001425_070--Hb_034482_040 Hb_034482_040--Hb_002989_040 Hb_034482_040--Hb_003226_240 Hb_001433_100 Hb_001433_100 Hb_034482_040--Hb_001433_100 Hb_032202_250 Hb_032202_250 Hb_034482_040--Hb_032202_250 Hb_141194_010 Hb_141194_010 Hb_034482_040--Hb_141194_010 Hb_091433_030--Hb_001425_060 Hb_003060_040 Hb_003060_040 Hb_091433_030--Hb_003060_040 Hb_091433_030--Hb_002989_040 Hb_091433_030--Hb_000103_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08135 3.45787 0.772113 0.0481757 0

CAGE analysis