Hb_001504_320

Information

Type -
Description -
Location Contig1504: 329225-334197
Sequence    

Annotation

kegg
ID vvi:100259856
description beta-amyrin synthase
nr
ID XP_012073072.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
swissprot
ID Q2XPU7
description Lupeol synthase OS=Ricinus communis PE=1 SV=1
trembl
ID A0A0D3L770
description 2,3-oxidosqualene cyclase OS=Ocimum basilicum PE=2 SV=1
Gene Ontology
ID GO:0042299
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_320 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
2 Hb_001425_110 0.1485985472 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
3 Hb_001842_120 0.1658073621 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_001101_010 0.1759795113 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
5 Hb_008092_140 0.1905610891 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
6 Hb_003837_020 0.1921596954 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
7 Hb_003773_030 0.2038436691 - - -
8 Hb_001007_050 0.2080646043 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
9 Hb_006452_150 0.2081296366 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
10 Hb_039305_010 0.208475055 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
11 Hb_000184_190 0.2121020086 - - hypothetical protein VITISV_016970 [Vitis vinifera]
12 Hb_000300_210 0.2156235639 - - gd2b, putative [Ricinus communis]
13 Hb_000979_050 0.2185464022 - - -
14 Hb_032202_250 0.2211298614 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
15 Hb_000387_060 0.2214632883 - - -
16 Hb_001842_080 0.2232035506 - - -
17 Hb_031284_050 0.2242775261 - - -
18 Hb_034587_030 0.2244256971 - - -
19 Hb_018609_040 0.2246255488 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
20 Hb_000270_800 0.2246333838 - - -

Gene co-expression network

sample Hb_001504_320 Hb_001504_320 Hb_001425_110 Hb_001425_110 Hb_001504_320--Hb_001425_110 Hb_001842_120 Hb_001842_120 Hb_001504_320--Hb_001842_120 Hb_001101_010 Hb_001101_010 Hb_001504_320--Hb_001101_010 Hb_008092_140 Hb_008092_140 Hb_001504_320--Hb_008092_140 Hb_003837_020 Hb_003837_020 Hb_001504_320--Hb_003837_020 Hb_003773_030 Hb_003773_030 Hb_001504_320--Hb_003773_030 Hb_000300_210 Hb_000300_210 Hb_001425_110--Hb_000300_210 Hb_000387_060 Hb_000387_060 Hb_001425_110--Hb_000387_060 Hb_000329_660 Hb_000329_660 Hb_001425_110--Hb_000329_660 Hb_000264_130 Hb_000264_130 Hb_001425_110--Hb_000264_130 Hb_001425_110--Hb_001842_120 Hb_183612_080 Hb_183612_080 Hb_001842_120--Hb_183612_080 Hb_001842_080 Hb_001842_080 Hb_001842_120--Hb_001842_080 Hb_000270_730 Hb_000270_730 Hb_001842_120--Hb_000270_730 Hb_000046_200 Hb_000046_200 Hb_001842_120--Hb_000046_200 Hb_002918_300 Hb_002918_300 Hb_001101_010--Hb_002918_300 Hb_000032_350 Hb_000032_350 Hb_001101_010--Hb_000032_350 Hb_001007_050 Hb_001007_050 Hb_001101_010--Hb_001007_050 Hb_001101_010--Hb_001425_110 Hb_032660_020 Hb_032660_020 Hb_001101_010--Hb_032660_020 Hb_010172_100 Hb_010172_100 Hb_001101_010--Hb_010172_100 Hb_001386_080 Hb_001386_080 Hb_008092_140--Hb_001386_080 Hb_002997_130 Hb_002997_130 Hb_008092_140--Hb_002997_130 Hb_028462_010 Hb_028462_010 Hb_008092_140--Hb_028462_010 Hb_123098_010 Hb_123098_010 Hb_008092_140--Hb_123098_010 Hb_004899_270 Hb_004899_270 Hb_008092_140--Hb_004899_270 Hb_000111_160 Hb_000111_160 Hb_008092_140--Hb_000111_160 Hb_031284_050 Hb_031284_050 Hb_003837_020--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_003837_020--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_003837_020--Hb_018609_040 Hb_000270_800 Hb_000270_800 Hb_003837_020--Hb_000270_800 Hb_075060_030 Hb_075060_030 Hb_003837_020--Hb_075060_030 Hb_002392_050 Hb_002392_050 Hb_003837_020--Hb_002392_050 Hb_039305_010 Hb_039305_010 Hb_003773_030--Hb_039305_010 Hb_007713_010 Hb_007713_010 Hb_003773_030--Hb_007713_010 Hb_159085_010 Hb_159085_010 Hb_003773_030--Hb_159085_010 Hb_000067_020 Hb_000067_020 Hb_003773_030--Hb_000067_020 Hb_000979_050 Hb_000979_050 Hb_003773_030--Hb_000979_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00857392 0 0 0 0.0246352 0.0162584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.272568 0.459588 0.0291481 0 0

CAGE analysis