Hb_003837_020

Information

Type -
Description -
Location Contig3837: 26769-34510
Sequence    

Annotation

kegg
ID pda:103710465
description uncharacterized LOC103710465
nr
ID XP_008794401.1
description PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID I1R7E2
description Uncharacterized protein (Fragment) OS=Oryza glaberrima PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003837_020 0.0 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
2 Hb_031284_050 0.0947390347 - - -
3 Hb_034587_030 0.0976797652 - - -
4 Hb_018609_040 0.0987449508 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
5 Hb_000270_800 0.0987833055 - - -
6 Hb_075060_030 0.0988165577 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
7 Hb_002392_050 0.107528495 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
8 Hb_000869_110 0.1076261664 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_039112_010 0.1084569253 - - -
10 Hb_001998_060 0.1414023447 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000184_190 0.1466610127 - - hypothetical protein VITISV_016970 [Vitis vinifera]
12 Hb_008092_140 0.1580817362 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
13 Hb_002903_010 0.188968879 - - 60S ribosomal protein L37-3 [Morus notabilis]
14 Hb_001504_320 0.1921596954 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
15 Hb_000804_030 0.1937027157 - - Protein C14orf111, putative [Ricinus communis]
16 Hb_002997_130 0.1977585254 - - -
17 Hb_115720_010 0.1978303083 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
18 Hb_028462_010 0.1980739916 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
19 Hb_123098_010 0.1980763371 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_004899_270 0.1980941468 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]

Gene co-expression network

sample Hb_003837_020 Hb_003837_020 Hb_031284_050 Hb_031284_050 Hb_003837_020--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_003837_020--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_003837_020--Hb_018609_040 Hb_000270_800 Hb_000270_800 Hb_003837_020--Hb_000270_800 Hb_075060_030 Hb_075060_030 Hb_003837_020--Hb_075060_030 Hb_002392_050 Hb_002392_050 Hb_003837_020--Hb_002392_050 Hb_031284_050--Hb_034587_030 Hb_031284_050--Hb_018609_040 Hb_031284_050--Hb_000270_800 Hb_031284_050--Hb_075060_030 Hb_031284_050--Hb_002392_050 Hb_000869_110 Hb_000869_110 Hb_031284_050--Hb_000869_110 Hb_034587_030--Hb_018609_040 Hb_034587_030--Hb_000270_800 Hb_034587_030--Hb_075060_030 Hb_034587_030--Hb_002392_050 Hb_034587_030--Hb_000869_110 Hb_018609_040--Hb_000270_800 Hb_018609_040--Hb_075060_030 Hb_018609_040--Hb_002392_050 Hb_018609_040--Hb_000869_110 Hb_000270_800--Hb_075060_030 Hb_000270_800--Hb_002392_050 Hb_000270_800--Hb_000869_110 Hb_075060_030--Hb_002392_050 Hb_075060_030--Hb_000869_110 Hb_002392_050--Hb_000869_110 Hb_039112_010 Hb_039112_010 Hb_002392_050--Hb_039112_010 Hb_001998_060 Hb_001998_060 Hb_002392_050--Hb_001998_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0185877 0 0 0 0 0.127773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88839 5.24562 0 0 0

CAGE analysis