Hb_000387_060

Information

Type -
Description -
Location Contig387: 77118-81196
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000387_060 0.0 - - -
2 Hb_003211_050 0.1388022468 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
3 Hb_032660_020 0.140305122 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
4 Hb_000329_660 0.1491333295 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
5 Hb_000714_010 0.1562132376 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
6 Hb_001425_110 0.1609803612 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
7 Hb_000792_120 0.164560541 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
8 Hb_003376_210 0.1659743811 - - -
9 Hb_001101_010 0.1770161295 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
10 Hb_001959_260 0.1772917137 - - -
11 Hb_003050_070 0.1775816466 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012022_100 0.1793642979 - - CPRD49 family protein [Populus trichocarpa]
13 Hb_000300_210 0.1815775502 - - gd2b, putative [Ricinus communis]
14 Hb_004635_060 0.1822967035 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
15 Hb_028285_030 0.1828100205 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
16 Hb_000059_350 0.183251422 - - glutamate dehydrogenase, putative [Ricinus communis]
17 Hb_001922_080 0.1842059224 - - Tellurite resistance protein tehA, putative [Ricinus communis]
18 Hb_001276_060 0.1853585305 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
19 Hb_002326_170 0.1902760542 - - Protein Z, putative [Ricinus communis]
20 Hb_003095_070 0.1928368944 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]

Gene co-expression network

sample Hb_000387_060 Hb_000387_060 Hb_003211_050 Hb_003211_050 Hb_000387_060--Hb_003211_050 Hb_032660_020 Hb_032660_020 Hb_000387_060--Hb_032660_020 Hb_000329_660 Hb_000329_660 Hb_000387_060--Hb_000329_660 Hb_000714_010 Hb_000714_010 Hb_000387_060--Hb_000714_010 Hb_001425_110 Hb_001425_110 Hb_000387_060--Hb_001425_110 Hb_000792_120 Hb_000792_120 Hb_000387_060--Hb_000792_120 Hb_001276_060 Hb_001276_060 Hb_003211_050--Hb_001276_060 Hb_003050_070 Hb_003050_070 Hb_003211_050--Hb_003050_070 Hb_011671_400 Hb_011671_400 Hb_003211_050--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003211_050--Hb_072912_020 Hb_003211_050--Hb_000714_010 Hb_003095_070 Hb_003095_070 Hb_003211_050--Hb_003095_070 Hb_032660_020--Hb_000714_010 Hb_003592_070 Hb_003592_070 Hb_032660_020--Hb_003592_070 Hb_001101_010 Hb_001101_010 Hb_032660_020--Hb_001101_010 Hb_002918_300 Hb_002918_300 Hb_032660_020--Hb_002918_300 Hb_032660_020--Hb_003050_070 Hb_000329_660--Hb_003211_050 Hb_001373_100 Hb_001373_100 Hb_000329_660--Hb_001373_100 Hb_000300_210 Hb_000300_210 Hb_000329_660--Hb_000300_210 Hb_003226_240 Hb_003226_240 Hb_000329_660--Hb_003226_240 Hb_000329_660--Hb_001276_060 Hb_000714_010--Hb_003050_070 Hb_000250_010 Hb_000250_010 Hb_000714_010--Hb_000250_010 Hb_010166_020 Hb_010166_020 Hb_000714_010--Hb_010166_020 Hb_003777_230 Hb_003777_230 Hb_000714_010--Hb_003777_230 Hb_149683_010 Hb_149683_010 Hb_000714_010--Hb_149683_010 Hb_001504_320 Hb_001504_320 Hb_001425_110--Hb_001504_320 Hb_001425_110--Hb_000300_210 Hb_001425_110--Hb_000329_660 Hb_000264_130 Hb_000264_130 Hb_001425_110--Hb_000264_130 Hb_001842_120 Hb_001842_120 Hb_001425_110--Hb_001842_120 Hb_012022_100 Hb_012022_100 Hb_000792_120--Hb_012022_100 Hb_001579_140 Hb_001579_140 Hb_000792_120--Hb_001579_140 Hb_000792_120--Hb_000300_210 Hb_000792_120--Hb_000329_660 Hb_008066_030 Hb_008066_030 Hb_000792_120--Hb_008066_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22226 0.0329903 0.065337 0.0670935 1.22375 0.18861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4484 13.3411 4.33053 0.418081 0

CAGE analysis