Hb_010166_020

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig10166: 10651-13142
Sequence    

Annotation

kegg
ID rcu:RCOM_0467650
description ccaat-binding transcription factor, putative
nr
ID XP_002528069.1
description ccaat-binding transcription factor, putative [Ricinus communis]
swissprot
ID Q9SMP0
description Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1
trembl
ID B9SQ00
description Ccaat-binding transcription factor, putative OS=Ricinus communis GN=RCOM_0467650 PE=4 SV=1
Gene Ontology
ID GO:0000786
description nuclear transcription factor y subunit c-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00774: 10906-13106 , PASA_asmbl_00775: 11004-13014 , PASA_asmbl_00777: 10957-13102
cDNA
(Sanger)
(ID:Location)		 010_K18.ab1: 11004-12589 , 024_J22.ab1: 10957-12808

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010166_020 0.0 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
2 Hb_001266_050 0.1072126635 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
3 Hb_002492_020 0.1124877142 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
4 Hb_001198_030 0.1189435313 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
5 Hb_000052_010 0.1194932136 - - hypothetical protein M569_08416, partial [Genlisea aurea]
6 Hb_000526_020 0.1239067427 - - thioredoxin-like family protein [Hevea brasiliensis]
7 Hb_007741_040 0.1240949216 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
8 Hb_004055_060 0.1243753228 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
9 Hb_003777_230 0.1248339797 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
10 Hb_004297_040 0.1340967983 - - acyl CoA reductase [Hevea brasiliensis]
11 Hb_003050_070 0.1369397813 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001252_140 0.1393772083 - - catalytic, putative [Ricinus communis]
13 Hb_149683_010 0.1404972562 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
14 Hb_000300_400 0.1450577818 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
15 Hb_000714_010 0.1454019377 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
16 Hb_002260_020 0.1459962201 - - -
17 Hb_011689_050 0.1494902401 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
18 Hb_006816_440 0.1525002905 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_005615_070 0.1525736741 - - Rab7 [Hevea brasiliensis]
20 Hb_001621_180 0.1551845221 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]

Gene co-expression network

sample Hb_010166_020 Hb_010166_020 Hb_001266_050 Hb_001266_050 Hb_010166_020--Hb_001266_050 Hb_002492_020 Hb_002492_020 Hb_010166_020--Hb_002492_020 Hb_001198_030 Hb_001198_030 Hb_010166_020--Hb_001198_030 Hb_000052_010 Hb_000052_010 Hb_010166_020--Hb_000052_010 Hb_000526_020 Hb_000526_020 Hb_010166_020--Hb_000526_020 Hb_007741_040 Hb_007741_040 Hb_010166_020--Hb_007741_040 Hb_001266_050--Hb_000526_020 Hb_001266_050--Hb_001198_030 Hb_001266_050--Hb_000052_010 Hb_004410_010 Hb_004410_010 Hb_001266_050--Hb_004410_010 Hb_000184_180 Hb_000184_180 Hb_001266_050--Hb_000184_180 Hb_010594_030 Hb_010594_030 Hb_002492_020--Hb_010594_030 Hb_004055_060 Hb_004055_060 Hb_002492_020--Hb_004055_060 Hb_005539_210 Hb_005539_210 Hb_002492_020--Hb_005539_210 Hb_002492_020--Hb_001198_030 Hb_002492_020--Hb_007741_040 Hb_001349_010 Hb_001349_010 Hb_001198_030--Hb_001349_010 Hb_004297_040 Hb_004297_040 Hb_001198_030--Hb_004297_040 Hb_000143_050 Hb_000143_050 Hb_001198_030--Hb_000143_050 Hb_001621_180 Hb_001621_180 Hb_001198_030--Hb_001621_180 Hb_000052_010--Hb_000184_180 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_000052_010--Hb_004055_060 Hb_000062_580 Hb_000062_580 Hb_000526_020--Hb_000062_580 Hb_000005_030 Hb_000005_030 Hb_000526_020--Hb_000005_030 Hb_003038_180 Hb_003038_180 Hb_000526_020--Hb_003038_180 Hb_000526_020--Hb_000184_180 Hb_007741_040--Hb_003777_230 Hb_007741_040--Hb_004055_060 Hb_003050_070 Hb_003050_070 Hb_007741_040--Hb_003050_070 Hb_002835_220 Hb_002835_220 Hb_007741_040--Hb_002835_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.142 0.265054 3.22462 4.0017 32.551 19.8059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.567 118.615 42.4505 5.87887 2.11567

CAGE analysis