Hb_000005_030

Information

Type -
Description -
Location Contig5: 48479-49135
Sequence    

Annotation

kegg
ID pop:POPTR_0009s00870g
description POPTRDRAFT_558341; hypothetical protein
nr
ID XP_002314312.2
description hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HQQ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s00870g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45673: 48637-49411
cDNA
(Sanger)
(ID:Location)		 006_G05.ab1: 48637-49258 , 007_K24.ab1: 48637-49258

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_030 0.0 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
2 Hb_000526_020 0.1027446503 - - thioredoxin-like family protein [Hevea brasiliensis]
3 Hb_006816_440 0.108703839 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_003038_180 0.1136797969 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
5 Hb_000062_580 0.1138560323 - - ATP binding protein, putative [Ricinus communis]
6 Hb_149683_010 0.1161540521 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
7 Hb_000184_180 0.1186100014 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
8 Hb_000052_010 0.1212852102 - - hypothetical protein M569_08416, partial [Genlisea aurea]
9 Hb_003057_130 0.1217858379 - - -
10 Hb_003540_230 0.1229799193 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
11 Hb_000284_010 0.1243169381 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
12 Hb_001999_120 0.1262285728 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
13 Hb_000580_170 0.126668909 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
14 Hb_001109_120 0.1300653426 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
15 Hb_012799_060 0.1321638216 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
16 Hb_029584_140 0.1364718633 - - senescence-associated family protein [Populus trichocarpa]
17 Hb_005410_030 0.1388251688 - - glutaredoxin 2 [Hevea brasiliensis]
18 Hb_001722_040 0.1402996556 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
19 Hb_002235_230 0.1435111639 - - latex abundant protein 1 [Hevea brasiliensis]
20 Hb_001153_080 0.1446433262 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_030 Hb_000005_030 Hb_000526_020 Hb_000526_020 Hb_000005_030--Hb_000526_020 Hb_006816_440 Hb_006816_440 Hb_000005_030--Hb_006816_440 Hb_003038_180 Hb_003038_180 Hb_000005_030--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_000005_030--Hb_000062_580 Hb_149683_010 Hb_149683_010 Hb_000005_030--Hb_149683_010 Hb_000184_180 Hb_000184_180 Hb_000005_030--Hb_000184_180 Hb_000526_020--Hb_000062_580 Hb_001266_050 Hb_001266_050 Hb_000526_020--Hb_001266_050 Hb_000052_010 Hb_000052_010 Hb_000526_020--Hb_000052_010 Hb_000526_020--Hb_003038_180 Hb_000526_020--Hb_000184_180 Hb_006816_440--Hb_149683_010 Hb_002235_230 Hb_002235_230 Hb_006816_440--Hb_002235_230 Hb_006816_440--Hb_000184_180 Hb_000444_030 Hb_000444_030 Hb_006816_440--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_006816_440--Hb_001741_080 Hb_006816_440--Hb_000052_010 Hb_003038_180--Hb_000062_580 Hb_001999_120 Hb_001999_120 Hb_003038_180--Hb_001999_120 Hb_001722_040 Hb_001722_040 Hb_003038_180--Hb_001722_040 Hb_029584_140 Hb_029584_140 Hb_003038_180--Hb_029584_140 Hb_003540_230 Hb_003540_230 Hb_003038_180--Hb_003540_230 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030 Hb_000062_580--Hb_001999_120 Hb_007021_020 Hb_007021_020 Hb_000062_580--Hb_007021_020 Hb_003581_090 Hb_003581_090 Hb_000062_580--Hb_003581_090 Hb_000062_580--Hb_001722_040 Hb_149683_010--Hb_002235_230 Hb_149683_010--Hb_000184_180 Hb_149683_010--Hb_000052_010 Hb_103752_010 Hb_103752_010 Hb_149683_010--Hb_103752_010 Hb_000300_400 Hb_000300_400 Hb_149683_010--Hb_000300_400 Hb_000184_180--Hb_000052_010 Hb_000184_180--Hb_000444_030 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_007747_130 Hb_007747_130 Hb_000184_180--Hb_007747_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.754 3.88428 3.04287 3.98063 28.6142 58.2276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
203.278 129.008 58.1998 15.1822 3.835

CAGE analysis