Hb_001266_050

Information

Type -
Description -
Location Contig1266: 43441-48859
Sequence    

Annotation

kegg
ID pop:POPTR_0005s12240g
description hypothetical protein
nr
ID XP_010906330.1
description PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID U5GF74
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12240g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08021: 45977-46803 , PASA_asmbl_08022: 46014-48816 , PASA_asmbl_08023: 45932-48816 , PASA_asmbl_08024: 46915-47359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_050 0.0 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
2 Hb_000526_020 0.1008567999 - - thioredoxin-like family protein [Hevea brasiliensis]
3 Hb_010166_020 0.1072126635 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
4 Hb_001198_030 0.1158627054 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
5 Hb_000052_010 0.1175149458 - - hypothetical protein M569_08416, partial [Genlisea aurea]
6 Hb_004410_010 0.1191320878 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
7 Hb_000184_180 0.1193591825 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
8 Hb_001252_140 0.1272962108 - - catalytic, putative [Ricinus communis]
9 Hb_006816_440 0.1306647794 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_149683_010 0.1355239397 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
11 Hb_000085_250 0.139828482 - - sodium/hydrogen exchanger, putative [Ricinus communis]
12 Hb_001722_040 0.1419832305 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
13 Hb_000300_400 0.1431144263 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
14 Hb_010344_040 0.1441625381 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
15 Hb_081245_010 0.1449559574 - - Caffeic acid 3-O-methyltransferase [Morus notabilis]
16 Hb_003777_230 0.1471425435 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
17 Hb_103752_010 0.1471974978 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
18 Hb_008557_020 0.1479000045 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
19 Hb_000787_070 0.1480881891 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
20 Hb_003038_180 0.1484930607 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]

Gene co-expression network

sample Hb_001266_050 Hb_001266_050 Hb_000526_020 Hb_000526_020 Hb_001266_050--Hb_000526_020 Hb_010166_020 Hb_010166_020 Hb_001266_050--Hb_010166_020 Hb_001198_030 Hb_001198_030 Hb_001266_050--Hb_001198_030 Hb_000052_010 Hb_000052_010 Hb_001266_050--Hb_000052_010 Hb_004410_010 Hb_004410_010 Hb_001266_050--Hb_004410_010 Hb_000184_180 Hb_000184_180 Hb_001266_050--Hb_000184_180 Hb_000062_580 Hb_000062_580 Hb_000526_020--Hb_000062_580 Hb_000526_020--Hb_000052_010 Hb_000005_030 Hb_000005_030 Hb_000526_020--Hb_000005_030 Hb_003038_180 Hb_003038_180 Hb_000526_020--Hb_003038_180 Hb_000526_020--Hb_000184_180 Hb_002492_020 Hb_002492_020 Hb_010166_020--Hb_002492_020 Hb_010166_020--Hb_001198_030 Hb_010166_020--Hb_000052_010 Hb_010166_020--Hb_000526_020 Hb_007741_040 Hb_007741_040 Hb_010166_020--Hb_007741_040 Hb_001349_010 Hb_001349_010 Hb_001198_030--Hb_001349_010 Hb_004297_040 Hb_004297_040 Hb_001198_030--Hb_004297_040 Hb_000143_050 Hb_000143_050 Hb_001198_030--Hb_000143_050 Hb_001621_180 Hb_001621_180 Hb_001198_030--Hb_001621_180 Hb_000052_010--Hb_000184_180 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_004055_060 Hb_004055_060 Hb_000052_010--Hb_004055_060 Hb_001252_140 Hb_001252_140 Hb_004410_010--Hb_001252_140 Hb_007747_130 Hb_007747_130 Hb_004410_010--Hb_007747_130 Hb_002660_160 Hb_002660_160 Hb_004410_010--Hb_002660_160 Hb_001104_120 Hb_001104_120 Hb_004410_010--Hb_001104_120 Hb_116264_010 Hb_116264_010 Hb_004410_010--Hb_116264_010 Hb_000787_070 Hb_000787_070 Hb_004410_010--Hb_000787_070 Hb_000184_180--Hb_006816_440 Hb_000444_030 Hb_000444_030 Hb_000184_180--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_000184_180--Hb_007747_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2646 0.461383 0.624465 7.16258 31.1289 26.6967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.159 70.9266 33.7118 3.59023 1.84255

CAGE analysis