Hb_004055_060

Information

Type -
Description -
Location Contig4055: 45817-47428
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015147mg
description hypothetical protein
nr
ID XP_012068948.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
swissprot
ID C4B8C4
description EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana GN=EPFL3 PE=1 SV=1
trembl
ID A0A067L0M5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24747 PE=4 SV=1
Gene Ontology
ID GO:0010374
description epidermal patterning factor-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40213: 45777-47061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_060 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
2 Hb_003023_050 0.0907214718 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
3 Hb_001279_250 0.1060240902 - - PREDICTED: pectate lyase-like [Jatropha curcas]
4 Hb_000052_010 0.1087627845 - - hypothetical protein M569_08416, partial [Genlisea aurea]
5 Hb_000580_160 0.1153202999 - - Nitrate transporter 1.5 [Morus notabilis]
6 Hb_010166_020 0.1243753228 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
7 Hb_002492_020 0.1307729178 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
8 Hb_003777_230 0.1340070622 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
9 Hb_000861_050 0.1405217734 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
10 Hb_150299_030 0.1416982195 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006469_060 0.1462510667 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
12 Hb_005276_100 0.146983719 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
13 Hb_151930_020 0.1485471134 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
14 Hb_012779_110 0.1500125864 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
15 Hb_007741_040 0.1517716746 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
16 Hb_000526_020 0.1534305361 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_000025_290 0.1552547209 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
18 Hb_001198_030 0.1563229743 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
19 Hb_000184_180 0.1589742268 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
20 Hb_001252_140 0.1594377923 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_004055_060 Hb_004055_060 Hb_003023_050 Hb_003023_050 Hb_004055_060--Hb_003023_050 Hb_001279_250 Hb_001279_250 Hb_004055_060--Hb_001279_250 Hb_000052_010 Hb_000052_010 Hb_004055_060--Hb_000052_010 Hb_000580_160 Hb_000580_160 Hb_004055_060--Hb_000580_160 Hb_010166_020 Hb_010166_020 Hb_004055_060--Hb_010166_020 Hb_002492_020 Hb_002492_020 Hb_004055_060--Hb_002492_020 Hb_003023_050--Hb_001279_250 Hb_003023_050--Hb_000580_160 Hb_003023_050--Hb_000052_010 Hb_012779_110 Hb_012779_110 Hb_003023_050--Hb_012779_110 Hb_028365_010 Hb_028365_010 Hb_003023_050--Hb_028365_010 Hb_008557_020 Hb_008557_020 Hb_001279_250--Hb_008557_020 Hb_001279_250--Hb_000052_010 Hb_001279_250--Hb_000580_160 Hb_000184_180 Hb_000184_180 Hb_001279_250--Hb_000184_180 Hb_000052_010--Hb_000184_180 Hb_000526_020 Hb_000526_020 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_005276_100 Hb_005276_100 Hb_000580_160--Hb_005276_100 Hb_006469_060 Hb_006469_060 Hb_000580_160--Hb_006469_060 Hb_000580_160--Hb_012779_110 Hb_002235_220 Hb_002235_220 Hb_000580_160--Hb_002235_220 Hb_001266_050 Hb_001266_050 Hb_010166_020--Hb_001266_050 Hb_010166_020--Hb_002492_020 Hb_001198_030 Hb_001198_030 Hb_010166_020--Hb_001198_030 Hb_010166_020--Hb_000052_010 Hb_010166_020--Hb_000526_020 Hb_007741_040 Hb_007741_040 Hb_010166_020--Hb_007741_040 Hb_010594_030 Hb_010594_030 Hb_002492_020--Hb_010594_030 Hb_005539_210 Hb_005539_210 Hb_002492_020--Hb_005539_210 Hb_002492_020--Hb_001198_030 Hb_002492_020--Hb_007741_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1854 0.42771 0.339432 0.368921 17.543 13.4811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.6419 63.1419 11.4102 3.23689 0.161558

CAGE analysis