Hb_008557_020

Information

Type -
Description -
Location Contig8557: 20163-23721
Sequence    

Annotation

kegg
ID pmum:103334783
description uncharacterized LOC103334783
nr
ID XP_012077890.1
description PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A067KMP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13657 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008557_020 0.0 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
2 Hb_001279_250 0.1176110259 - - PREDICTED: pectate lyase-like [Jatropha curcas]
3 Hb_001621_180 0.1455291447 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
4 Hb_001266_050 0.1479000045 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
5 Hb_150299_030 0.1508483186 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001252_140 0.1511232099 - - catalytic, putative [Ricinus communis]
7 Hb_000052_010 0.1520252567 - - hypothetical protein M569_08416, partial [Genlisea aurea]
8 Hb_004410_010 0.1528164362 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
9 Hb_004545_160 0.158774981 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
10 Hb_007441_180 0.161792388 - - conserved hypothetical protein [Ricinus communis]
11 Hb_043061_010 0.1619072237 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
12 Hb_073973_110 0.1650185295 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
13 Hb_011310_060 0.1655094659 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
14 Hb_000184_180 0.1661311438 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
15 Hb_004055_060 0.1663126907 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
16 Hb_003023_050 0.1665430097 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
17 Hb_008705_090 0.1667221085 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
18 Hb_000526_020 0.1667653929 - - thioredoxin-like family protein [Hevea brasiliensis]
19 Hb_034585_040 0.1672396283 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
20 Hb_000580_160 0.1679606525 - - Nitrate transporter 1.5 [Morus notabilis]

Gene co-expression network

sample Hb_008557_020 Hb_008557_020 Hb_001279_250 Hb_001279_250 Hb_008557_020--Hb_001279_250 Hb_001621_180 Hb_001621_180 Hb_008557_020--Hb_001621_180 Hb_001266_050 Hb_001266_050 Hb_008557_020--Hb_001266_050 Hb_150299_030 Hb_150299_030 Hb_008557_020--Hb_150299_030 Hb_001252_140 Hb_001252_140 Hb_008557_020--Hb_001252_140 Hb_000052_010 Hb_000052_010 Hb_008557_020--Hb_000052_010 Hb_003023_050 Hb_003023_050 Hb_001279_250--Hb_003023_050 Hb_004055_060 Hb_004055_060 Hb_001279_250--Hb_004055_060 Hb_001279_250--Hb_000052_010 Hb_000580_160 Hb_000580_160 Hb_001279_250--Hb_000580_160 Hb_000184_180 Hb_000184_180 Hb_001279_250--Hb_000184_180 Hb_001621_180--Hb_001252_140 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_000563_590 Hb_000563_590 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_001104_120 Hb_001104_120 Hb_001621_180--Hb_001104_120 Hb_000526_020 Hb_000526_020 Hb_001266_050--Hb_000526_020 Hb_010166_020 Hb_010166_020 Hb_001266_050--Hb_010166_020 Hb_001198_030 Hb_001198_030 Hb_001266_050--Hb_001198_030 Hb_001266_050--Hb_000052_010 Hb_004410_010 Hb_004410_010 Hb_001266_050--Hb_004410_010 Hb_001266_050--Hb_000184_180 Hb_004958_050 Hb_004958_050 Hb_150299_030--Hb_004958_050 Hb_150299_030--Hb_000526_020 Hb_011689_050 Hb_011689_050 Hb_150299_030--Hb_011689_050 Hb_150299_030--Hb_000052_010 Hb_002781_020 Hb_002781_020 Hb_150299_030--Hb_002781_020 Hb_034585_040 Hb_034585_040 Hb_150299_030--Hb_034585_040 Hb_001252_140--Hb_004410_010 Hb_007747_130 Hb_007747_130 Hb_001252_140--Hb_007747_130 Hb_006469_060 Hb_006469_060 Hb_001252_140--Hb_006469_060 Hb_001252_140--Hb_001104_120 Hb_001252_140--Hb_034585_040 Hb_000052_010--Hb_000184_180 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_000052_010--Hb_004055_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20078 0.0980688 0.141311 0.102075 1.90312 2.60985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81322 5.25492 1.35867 0.0444004 0.118816

CAGE analysis