Hb_150299_030

Information

Type -
Description -
Location Contig150299: 55638-63485
Sequence    

Annotation

kegg
ID rcu:RCOM_1080770
description hypothetical protein
nr
ID XP_002514934.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID D9UBG0
description Inactive protein RESTRICTED TEV MOVEMENT 1 OS=Arabidopsis thaliana GN=RTM1 PE=3 SV=1
trembl
ID B9RMG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12611: 55615-63487 , PASA_asmbl_12612: 55595-62994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150299_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004958_050 0.1129118378 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
3 Hb_000526_020 0.117802169 - - thioredoxin-like family protein [Hevea brasiliensis]
4 Hb_011689_050 0.122670699 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
5 Hb_000052_010 0.1274154766 - - hypothetical protein M569_08416, partial [Genlisea aurea]
6 Hb_002781_020 0.1302815494 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
7 Hb_034585_040 0.1341821822 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
8 Hb_002234_210 0.1342254036 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
9 Hb_001252_140 0.1360309813 - - catalytic, putative [Ricinus communis]
10 Hb_001621_180 0.1378378721 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
11 Hb_003057_130 0.1408728705 - - -
12 Hb_000580_160 0.140902584 - - Nitrate transporter 1.5 [Morus notabilis]
13 Hb_004055_060 0.1416982195 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
14 Hb_000062_580 0.1442149452 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001616_020 0.1442558899 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
16 Hb_000134_020 0.147249551 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_002293_030 0.1473353394 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
18 Hb_011310_060 0.1477517323 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
19 Hb_000449_040 0.1483011824 - - protein with unknown function [Ricinus communis]
20 Hb_000161_050 0.1494977772 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_150299_030 Hb_150299_030 Hb_004958_050 Hb_004958_050 Hb_150299_030--Hb_004958_050 Hb_000526_020 Hb_000526_020 Hb_150299_030--Hb_000526_020 Hb_011689_050 Hb_011689_050 Hb_150299_030--Hb_011689_050 Hb_000052_010 Hb_000052_010 Hb_150299_030--Hb_000052_010 Hb_002781_020 Hb_002781_020 Hb_150299_030--Hb_002781_020 Hb_034585_040 Hb_034585_040 Hb_150299_030--Hb_034585_040 Hb_002234_210 Hb_002234_210 Hb_004958_050--Hb_002234_210 Hb_004958_050--Hb_011689_050 Hb_001616_020 Hb_001616_020 Hb_004958_050--Hb_001616_020 Hb_000634_050 Hb_000634_050 Hb_004958_050--Hb_000634_050 Hb_000526_150 Hb_000526_150 Hb_004958_050--Hb_000526_150 Hb_003638_080 Hb_003638_080 Hb_004958_050--Hb_003638_080 Hb_000062_580 Hb_000062_580 Hb_000526_020--Hb_000062_580 Hb_001266_050 Hb_001266_050 Hb_000526_020--Hb_001266_050 Hb_000526_020--Hb_000052_010 Hb_000005_030 Hb_000005_030 Hb_000526_020--Hb_000005_030 Hb_003038_180 Hb_003038_180 Hb_000526_020--Hb_003038_180 Hb_000184_180 Hb_000184_180 Hb_000526_020--Hb_000184_180 Hb_000963_030 Hb_000963_030 Hb_011689_050--Hb_000963_030 Hb_011689_050--Hb_001616_020 Hb_001123_120 Hb_001123_120 Hb_011689_050--Hb_001123_120 Hb_000161_050 Hb_000161_050 Hb_011689_050--Hb_000161_050 Hb_000144_110 Hb_000144_110 Hb_011689_050--Hb_000144_110 Hb_000052_010--Hb_000184_180 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_004055_060 Hb_004055_060 Hb_000052_010--Hb_004055_060 Hb_002781_020--Hb_000634_050 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_010172_030 Hb_010172_030 Hb_002781_020--Hb_010172_030 Hb_002781_020--Hb_000161_050 Hb_000362_210 Hb_000362_210 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190 Hb_000563_590 Hb_000563_590 Hb_034585_040--Hb_000563_590 Hb_001621_180 Hb_001621_180 Hb_034585_040--Hb_001621_180 Hb_034585_040--Hb_002781_020 Hb_034585_040--Hb_001123_120 Hb_009252_130 Hb_009252_130 Hb_034585_040--Hb_009252_130 Hb_007021_020 Hb_007021_020 Hb_034585_040--Hb_007021_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.917 14.9163 5.78614 9.4269 48.3396 104.254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
241.353 323.057 65.1209 13.8681 11.9471

CAGE analysis