Hb_002235_220

Information

Type -
Description -
Location Contig2235: 155722-157748
Sequence    

Annotation

kegg
ID mus:103971326
description pectinesterase 31
nr
ID XP_012084743.1
description PREDICTED: pectinesterase 31-like [Jatropha curcas]
swissprot
ID Q9LVQ0
description Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1
trembl
ID A0A067K5V6
description Pectinesterase OS=Jatropha curcas GN=JCGZ_19878 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_220 0.0 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
2 Hb_000580_160 0.1285436136 - - Nitrate transporter 1.5 [Morus notabilis]
3 Hb_006469_060 0.1482499559 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
4 Hb_005410_030 0.1498349385 - - glutaredoxin 2 [Hevea brasiliensis]
5 Hb_000184_180 0.152206835 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
6 Hb_000052_010 0.1523622947 - - hypothetical protein M569_08416, partial [Genlisea aurea]
7 Hb_000284_010 0.1579076919 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
8 Hb_003023_050 0.161237608 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
9 Hb_007747_130 0.1618393112 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
10 Hb_000078_030 0.1681840154 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003756_010 0.1687124296 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
12 Hb_012779_110 0.1690176707 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
13 Hb_012799_060 0.1703198365 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
14 Hb_004055_060 0.1736440117 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
15 Hb_005276_100 0.1756628374 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
16 Hb_000107_650 0.1764055676 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
17 Hb_001741_080 0.1776689536 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
18 Hb_001279_250 0.1780397064 - - PREDICTED: pectate lyase-like [Jatropha curcas]
19 Hb_000580_170 0.1781114925 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
20 Hb_002221_080 0.1782243733 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_220 Hb_002235_220 Hb_000580_160 Hb_000580_160 Hb_002235_220--Hb_000580_160 Hb_006469_060 Hb_006469_060 Hb_002235_220--Hb_006469_060 Hb_005410_030 Hb_005410_030 Hb_002235_220--Hb_005410_030 Hb_000184_180 Hb_000184_180 Hb_002235_220--Hb_000184_180 Hb_000052_010 Hb_000052_010 Hb_002235_220--Hb_000052_010 Hb_000284_010 Hb_000284_010 Hb_002235_220--Hb_000284_010 Hb_005276_100 Hb_005276_100 Hb_000580_160--Hb_005276_100 Hb_003023_050 Hb_003023_050 Hb_000580_160--Hb_003023_050 Hb_000580_160--Hb_006469_060 Hb_012779_110 Hb_012779_110 Hb_000580_160--Hb_012779_110 Hb_004055_060 Hb_004055_060 Hb_000580_160--Hb_004055_060 Hb_001252_140 Hb_001252_140 Hb_006469_060--Hb_001252_140 Hb_007747_130 Hb_007747_130 Hb_006469_060--Hb_007747_130 Hb_005615_070 Hb_005615_070 Hb_006469_060--Hb_005615_070 Hb_001621_180 Hb_001621_180 Hb_006469_060--Hb_001621_180 Hb_006469_060--Hb_012779_110 Hb_001109_120 Hb_001109_120 Hb_005410_030--Hb_001109_120 Hb_000861_050 Hb_000861_050 Hb_005410_030--Hb_000861_050 Hb_000005_030 Hb_000005_030 Hb_005410_030--Hb_000005_030 Hb_005410_030--Hb_000580_160 Hb_012799_060 Hb_012799_060 Hb_005410_030--Hb_012799_060 Hb_005410_030--Hb_012779_110 Hb_006816_440 Hb_006816_440 Hb_000184_180--Hb_006816_440 Hb_000184_180--Hb_000052_010 Hb_000444_030 Hb_000444_030 Hb_000184_180--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_000184_180--Hb_007747_130 Hb_000526_020 Hb_000526_020 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_000052_010--Hb_004055_060 Hb_000284_010--Hb_115919_020 Hb_000078_030 Hb_000078_030 Hb_000284_010--Hb_000078_030 Hb_005016_130 Hb_005016_130 Hb_000284_010--Hb_005016_130 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080 Hb_002298_040 Hb_002298_040 Hb_000284_010--Hb_002298_040 Hb_000193_230 Hb_000193_230 Hb_000284_010--Hb_000193_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4241 0.0317968 0 0.0344869 2.42961 5.76168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2827 13.9054 4.00823 0.139693 0

CAGE analysis