Hb_001109_120

Information

Type -
Description -
Location Contig1109: 195479-197659
Sequence    

Annotation

kegg
ID pda:103695933
description acyl-CoA-binding protein
nr
ID XP_010278803.1
description PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
swissprot
ID O04066
description Acyl-CoA-binding protein OS=Ricinus communis PE=3 SV=1
trembl
ID F4YFC6
description Acyl-CoA-binding protein OS=Camellia sinensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description acyl- -binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03357: 195571-197716 , PASA_asmbl_03358: 196101-196600
cDNA
(Sanger)
(ID:Location)		 001_A01.ab1: 195618-197566 , 001_H23.ab1: 195618-197568 , 001_I15.ab1: 195618-197715 , 003_C08.ab1: 195632-197577 , 004_I21.ab1: 195618-197568 , 005_H12.ab1: 195632-197568 , 007_J16.ab1: 195632-197567 , 009_P22.ab1: 195615-197568 , 011_J15.ab1: 195618-197568 , 011_P13.ab1: 195618-197567 , 013_F19.ab1: 195632-197568 , 014_M08.ab1: 195618-197566 , 015_K05.ab1: 196989-197206 , 018_O09.ab1: 195637-197577 , 019_E19.ab1: 195618-197577 , 019_F19.ab1: 195632-197577 , 019_N06.ab1: 195632-197577 , 020_J16.ab1: 195618-197568 , 021_G11.ab1: 195618-197568 , 023_I10.ab1: 195633-197567 , 023_J19.ab1: 195659-197585 , 024_E08.ab1: 195630-197566 , 024_N16.ab1: 195637-197567 , 025_J21.ab1: 195607-197568 , 026_I07.ab1: 195627-197575 , 028_L03.ab1: 195618-197548 , 031_N19.ab1: 195618-197568 , 032_G08.ab1: 195623-197575 , 034_A05.ab1: 195579-197576 , 034_E11.ab1: 195618-197566 , 034_G01.ab1: 195632-197568 , 035_B14.ab1: 195618-197567 , 036_D06.ab1: 195618-197567 , 036_O03.ab1: 195579-197576 , 038_C09.ab1: 195641-197577 , 038_N24.ab1: 195632-197575 , 039_B18.ab1: 195618-197568 , 040_O14.ab1: 195632-197567 , 042_M24.ab1: 195625-197564 , 043_J07.ab1: 195633-197567 , 045_K20.ab1: 195618-197577 , 046_C20.ab1: 195618-197575 , 046_H07.ab1: 197445-197579 , 048_O10.ab1: 195618-197566 , 050_K20.ab1: 195579-197577 , 053_F23.ab1: 195568-197568

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001109_120 0.0 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
2 Hb_000580_170 0.1139090325 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
3 Hb_002221_080 0.1197866682 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
4 Hb_005410_030 0.1203996037 - - glutaredoxin 2 [Hevea brasiliensis]
5 Hb_012799_060 0.1255104139 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
6 Hb_004724_140 0.1262228131 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
7 Hb_001722_040 0.1269624222 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
8 Hb_029584_140 0.1274763105 - - senescence-associated family protein [Populus trichocarpa]
9 Hb_000130_390 0.1290769811 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
10 Hb_124315_040 0.1298646785 - - hypothetical protein 19 [Hevea brasiliensis]
11 Hb_007625_020 0.130004134 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
12 Hb_000005_030 0.1300653426 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
13 Hb_012305_060 0.1308489634 - - protein translocase, putative [Ricinus communis]
14 Hb_000284_010 0.1318131929 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
15 Hb_000699_110 0.1360736629 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
16 Hb_000526_020 0.136878399 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_007451_030 0.1373578287 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
18 Hb_003540_230 0.1393713781 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
19 Hb_004545_160 0.1402372658 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
20 Hb_000078_030 0.1446375581 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001109_120 Hb_001109_120 Hb_000580_170 Hb_000580_170 Hb_001109_120--Hb_000580_170 Hb_002221_080 Hb_002221_080 Hb_001109_120--Hb_002221_080 Hb_005410_030 Hb_005410_030 Hb_001109_120--Hb_005410_030 Hb_012799_060 Hb_012799_060 Hb_001109_120--Hb_012799_060 Hb_004724_140 Hb_004724_140 Hb_001109_120--Hb_004724_140 Hb_001722_040 Hb_001722_040 Hb_001109_120--Hb_001722_040 Hb_000580_170--Hb_012799_060 Hb_000078_030 Hb_000078_030 Hb_000580_170--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_000580_170--Hb_001741_080 Hb_003540_230 Hb_003540_230 Hb_000580_170--Hb_003540_230 Hb_005016_130 Hb_005016_130 Hb_000580_170--Hb_005016_130 Hb_001102_010 Hb_001102_010 Hb_000580_170--Hb_001102_010 Hb_000284_010 Hb_000284_010 Hb_002221_080--Hb_000284_010 Hb_002298_040 Hb_002298_040 Hb_002221_080--Hb_002298_040 Hb_002221_080--Hb_005016_130 Hb_002221_080--Hb_000078_030 Hb_115919_020 Hb_115919_020 Hb_002221_080--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_002221_080--Hb_000787_070 Hb_000861_050 Hb_000861_050 Hb_005410_030--Hb_000861_050 Hb_000005_030 Hb_000005_030 Hb_005410_030--Hb_000005_030 Hb_000580_160 Hb_000580_160 Hb_005410_030--Hb_000580_160 Hb_005410_030--Hb_012799_060 Hb_012779_110 Hb_012779_110 Hb_005410_030--Hb_012779_110 Hb_012799_060--Hb_000078_030 Hb_012799_060--Hb_001741_080 Hb_030765_020 Hb_030765_020 Hb_012799_060--Hb_030765_020 Hb_012799_060--Hb_005016_130 Hb_012799_060--Hb_003540_230 Hb_001623_240 Hb_001623_240 Hb_004724_140--Hb_001623_240 Hb_003777_180 Hb_003777_180 Hb_004724_140--Hb_003777_180 Hb_002529_100 Hb_002529_100 Hb_004724_140--Hb_002529_100 Hb_004116_080 Hb_004116_080 Hb_004724_140--Hb_004116_080 Hb_011931_050 Hb_011931_050 Hb_004724_140--Hb_011931_050 Hb_001341_130 Hb_001341_130 Hb_004724_140--Hb_001341_130 Hb_183963_020 Hb_183963_020 Hb_001722_040--Hb_183963_020 Hb_025087_010 Hb_025087_010 Hb_001722_040--Hb_025087_010 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001366_230 Hb_001366_230 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11468 247.58 660.277 800.784 5006.28 4560.3
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14533.2 9377.17 3743.06 622.884 308.268

CAGE analysis